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7 protocols using rabbit anti egfr

1

Co-immunoprecipitation of EGFR and PI3Kβ

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Co‐immunoprecipitation (Co‐IP) experiments were performed using the Thermo Fisher Scientific Pierce Co‐IP Kit (26149), following the manufacturer's protocol. In brief, cells were exposed to drugs when cell confluency reached 60–70%. After 4 or 24 h of drug exposure, cells were lysed with an ice‐cold Lysis/Wash Buffer supplemented with fresh protease and phosphatase inhibitors (Roche). Cell lysates were precleared by incubating the lysate with Control Agarose Resin at 4 °C for 1 h. To prepare antibody‐immobilized AminoLink Plus Coupling Resin, 25 μL Coupling Resin, and 1 μg of rabbit anti‐EGFR (Santa Cruz Biotechnology, Dallas, TX, USA; sc‐120) or IgG control antibody (Invitrogen, Waltham, MA, USA; 02‐6102) were co‐incubated in a spin column for 2 h at room temperature. Columns were then washed twice with 1× Coupling Buffer and six times with Wash Solution, and centrifuged after each wash. Subsequently, precleared cell lysate was added to the column containing antibody‐coupled resin, and incubated overnight at 4 °C with gentle mixing. Proteins were eluted using 60 μL of Elution Buffer, and eluates were analyzed by western blotting with primary antibodies for EGFR, pEGFR, PI3Kβ, and tubulin. See Supplementary Information section for antibody details. Table S1 in the Supporting Information section lists the antibodies and dilutions used for Co‐IP.
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2

Western Blotting for Protein Detection

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Western blotting analysis was performed as previously described (23, 38). Primary antibodies for Western blotting analysis were rabbit polyclonal anti-GAPDH (Cell Signaling, San Jose, CA) and rabbit anti-EGFR (Santa Cruz Biotechnology). Secondary antibody is HRP-conjugated anti-rabbit (Dako, Carpinteria, CA).
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3

Immunohistochemical Analysis of Colorectal Cancer

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Immunostaining was performed on 5-μm formalin-fixed, paraffin-embedded tissue sections using an immunoperoxidase method with rabbit anti-Cav-1 (1: 400; Santa Cruz, Dallas, Texas, USA); rabbit anti-EGFR (1: 100; Santa Cruz, Dallas, Texas, USA), and rabbit anti-Ki-67 (1: 100; Sunbiote, Shanghai, China) monoclonal antibodies. Protein was visualized using the PV and DAB chromogenic kits (Beijing Zhongshan Golden Bridge Biotechnology) following the manufacturer’s instructions.
Two pathologists blinded to the experiments assessed the extent and intensity of immunostaining. The protein expression levels of Cav-1 and EGFR were observed under high-power magnification (×400); 5 different fields of view were randomly selected in each section, and 200 cells were counted. The degree of staining was scored between 0 and 3 points: 0 point=no staining, 1 point=weak staining, 2 points=moderate staining, and 3 points=strong staining. Cells scoring >2 points were defined as positive cells; <50% of positive cells within a field was defined as a negative expression, and ≥50% of positive cells was defined as a positive expression. We chose EGFR-positive expression tissues for the subsequent study. A total of 76 cases of colorectal cancer tissues were further tested for the expressions of Cav-1 and Ki-67.
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4

Antibody Characterization for EGFR Signaling

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The primary antibodies used for immunoblot analysis and immunohistochemical staining were rabbit anti-EGFR, mouse anti-vinculin, mouse anti-Tom23, goat anti-Tim23, rabbit anti-Mfn1, mouse anti-Drp1 (all above from Santa Cruz Biotechnology, CA, USA), mouse anti-MTCO1 (Abcam, Cambridge, UK), rabbit anti-phospho-EGFR (Tyr1068), rabbit anti- phospho-Drp1 (Ser637) (all above from Cell Signaling Technology, Inc., MA, USA), mouse anti-OPA1 (BD Biosciences, NJ, USA) and mouse anti-myc, mouse anti-Flag, mouse anti-β actin antibody (all above from Sigma-Aldrich, Inc., MO, USA). The primary antibodies used for immnofluorescence staining were rabbit anti-EGFR (Abcam, Cambridge, UK) antibody.
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5

Histological and Immunofluorescent Analysis of Frozen Tumor Tissues

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Frozen tumor tissues were sectioned in 10 µm thickness using a Leica CM3050 S cryo-microtome (Leica Biosystems Ltd., Newcastle) and fixed in ice-cold methanol. The sections were stained with haematoxylin and eosin and examined using an Olympus IX81 microscope interfaced with a cooled EM-CCD camera (C9200-2, Hamamatsu Photonics KK, Hamamatsu, Japan). For immunofluorescence assessment, frozen sections were fixed in cold methanol for 20 min. After PBST washing, sections were blocked in normal goat serum for 30 min and then incubated with rabbit anti-EGFR (1:100, Santa Cruz Biotechnology, Inc, Dallas, TX) overnight at 4 ºC, followed by Goat anti-rabbit Alexa Fluo®488 conjugated Goat anti-Rabbit antibody (1:500, Molecular Probes, Thermo Fisher Scientific). For negative control, EGFR antibody was replaced with normal rabbit IgG.
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6

Western Blot Analysis of Protein Expression

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Tissue samples were prepared using a 7-ml dounce tissue grinder (Wheaton, USA) in complete RIPA buffer (RIPA buffer (Thermo) supplemented with 1 mM sodium orthovanadate, 10 mM sodium fluoride and 1 protease inhibitor tablet (Roche)). WT and AEP−/− MEFs (2 × 105 cells) treated or untreated with the different inhibitors were washed once with ice-cold PBS and lysed using complete RIPA buffer. Tissue and cell lysates were centrifuged at 20,000×g for 10 min and equal amounts of protein loaded on 4–12% NuPAGE gels (Invitrogen) and then transferred onto nitrocellulose membranes (Amersham). Membranes were probed with the following antibodies: rabbit anti-P-STAT3, mouse anti-STAT3, rabbit anti-GAPDH and rabbit anti-LC3 (Cell Signaling), rabbit anti-Ym1 (StemCell Technologies), rabbit anti-EGFR (SantaCruz), rabbit anti-Lamp1, rabbit anti-CtsD, rabbit anti-Fn1 and anti-CtsB (abCam), rabbit anti-TFEB (Bethyl) and rabbit anti-Gns (ProteinTech) and goat anti-OSMRβ (R&D Systems). Sheep anti-AEP was obtained as described previously32 (link) and sheep anti-CtsL and CtsH were generous gifts from Drs Tina Zavašnik-Bergant and Janko Kos (Jožef Stefan Institute, Ljubljana, Slovenia)
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7

Antibody Immunodetection Protocol

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The following antibodies were used: rabbit anti-human transferrin (A0061, Dako); rabbit anti-human Gc-globulin (also known as VDBP, A0021, Dako); rabbit anti-uteroglobin (also known as CC16, ab40873, Abcam); rabbit anti-SLC1A5 (also known as SGLT2, ab84903, Abcam); rabbit NaPi-IIa (gift from C.A.Wagner, University of Zurich, Zurich, Switzerland); rabbit anti-human AQP1 (ab2219, Millipore); mouse anti-β-actin (A2228, Sigma-Aldrich); mouse conjugated to Fluorescein (FITC) anti-PI(4,5)P2 (Z-G045, Echelon Biosciences Inc.); mouse anti-EEA1 (610456, BD Bioscience); rabbit anti-RFP (600–401-379, ROCKLAND); sheep anti-LRP2 (gift from P. Verroust and R. Kozyraki, INSERM, Paris, France); mouse anti Flotillin-1(610821, BD Bioscience); mouse anti-α-tubulin (T5168, Sigma-Aldrich); rabbit anti-GAPDH (2118, Cell Signaling Technology); rat anti-LAMP1 (sc-19992, Santa Cruz Biotechnology); goat anti-Cathepsin-D (Cts-D; sc-6486, Santa Cruz Biotechnology); rabbit anti-EGFR (1005 sc-03, Santa Cruz Biotechnology); Alexa-488 Phalloidin (F-actin, A12379, Thermofisher Scientific); mouse anti-Transferrin Receptor Antibody (H68,4, ThermoFisher Scientific); WGA FITC Conjugate (L 4895, Sigma-Aldrich); mouse anti-Na+/K+-ATPase subunit α1 (C464.6 EMD Millipore); rabbit anti-MPR and rabbit anti-OCRL (gift from A. De Matteis, Telethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Italy).
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