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8 protocols using anti cxcr4

1

Western Blot Analysis of Signaling Pathways

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RAW264.7 cells were washed twice with cold phosphate-buffered saline (PBS, pH = 7.0), and lysed in radioimmunoprecipitation (RIPA) buffer [Cell Signaling Technology (CST), USA] supplemented with protease inhibitors (Roche, USA). The protein concentration of each sample was assayed using the bicinchoninic acid method (BCA kit) (Pierce, Rockford, IL, USA). Equal amounts of protein (60 μg) were subjected to sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) on 12.5% gel. Then, the protein was blotted onto a NC membrane. After blocking with 5% non-fat milk in 20 mM of tris-buffered saline (TBS) with 0.1% Tween for 1 h at room temperature with shaking, they were incubated with the indicated primary antibodies at 4 °C overnight, followed by the appropriate fluorescent secondary antibodies (1:5000 dilution) for 2 h at room temperature. The immune-reactive proteins were detected using the Odyssey laser digital imaging system (Gene Company). Primary antibodies employed in this study included anti-GAPDH (1:1000, CST, USA), anti-p65 (1:1000, CST, USA), anti-Erk1/2 (1:1000, CST, USA), anti-JNK (1:1000, CST, USA), anti-p38 (1:1000, CST, USA), anti-p-p65 (1:1000, CST, USA), anti-p-Erk1/2 (1:1000, CST, USA), anti-p-JNK (1:1000, CST, USA), anti-p-p38 (1:1000, CST, USA) and anti-CXCR4 (1:1000, Thermo Fisher, USA).
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2

Immunofluorescence Staining of Muscle and Rectal Tissues

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Frozen skeletal muscle and rectal tissue sections were fixed in 4% paraformaldehyde, washed in phosphate-buffered saline (PBS), and permeabilized with 0.3% Triton X-100 in PBS. Nonspecific binding was blocked by incubating sections with 10% (w/v) bovine serum albumin (BSA; Dako Cytomation, Santa Clara, CA, USA) in PBS for 15 min. The slices were subsequently incubated with anti-GFP (Abcam, Cambridge, UK), anti-CXCL12 (Proteintech, Rosemont, IL, USA), and anti-CXCR4 (Novus Biologicals, Centennial, CO, USA) for 2 h at a concentration of 5.0, 1.0, or 1.0 µg/mL. Next, the sections were incubated with fluorescence-labeled secondary antibody; for anti-GFP, Alexa 488 (Thermo Fisher Scientific, Waltham, MA, USA) was used; and for anti-CXCL12 and anti-CXCR4, Alexa 594 was used. Next, the sections were incubated with 4′,6-diamidino-2-phenylindole (DAPI) for 30 min. After washing, the stained slices were mounted using the ProLong Diamond Antifade Mountant (Thermo Fisher Scientific). Images were taken using BZ-X700 (Keyence, Tokyo, Japan).
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3

Investigating Cellular Signaling Pathways

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Monoclonal antibodies to NF-κB (#MAB5078), and phospho-specific p65-NF-κB (#MAB7226), MMP-9 (#MAB911), polyclonal caspase-3 (#AF835) were purchased from R&D Systems (Heidelberg, Germany). Monoclonal antibodies to anti-FAK (#610088), anti-phospho-FAK (#558540) were from Becton Dickinson (Heidelberg, Germany). Monoclonal antibodies to β-actin (#A4700), resveratrol, alginate, DAPI, Fluoromount were from Sigma-Aldrich (Taufkirchen, Germany). Monoclonal anti-E-cadherin (#sc-21791), anti-vimentin (#sc-53464), anti-slug (#sc-166476), anti-paxillin (#sc-365059) normal mouse IgG (#sc-2025) were from Santa Cruz Biotechnology (Dallas, Texas, United States). Monoclonal anti-β1-integrin (#14-0299-82) and anti-CXCR4 (#35-8800) were from Thermo Fisher Scientific (Langenselbold, Germany). Secondary rhodamine-coupled antibodies for immunofluorescence were from Dianova (Hamburg, Germany), and alkaline phosphatase-linked antibodies for Western blotting were from EMD Millipore (Schwalbach, Germany). resveratrol was prepared in 100 mM stocks with ethanol and directly diluted in the cell culture medium for CRC cell treatment, without exceeding an ethanol concentration of 0.1% during the investigations.
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4

Multiparametric Flow Cytometry of Lymphocytes

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Cells suspended in PBS supplemented with 0.5% w/v bovine albumin serum (BSA) and 2 mM EDTA were stained with combinations of the following antibodies: anti-CD19 (BD Biosciences, BV421), anti-GL7 (eBioscience, Alexa488), anti-Fas (CD95) (eBioscience, APC), anti-B220 (CD45R) (BioLegend, BV711 & APC, BD Biosciences, BUV496), anti-CD38 (BD Biosciences, BUV395), anti-CXCR4 (eBioscience, PE/Cy7), anti-CD86 (BD Biosciences, BV421, eBiosciences, FITC), anti-IgG1 (eBioscience, PE/Cy7), anti-CD69 (BioLegend, APC), anti-IgM (BD Biosciences, BV711), and anti-MHCII (eBioscience, PE/Cy5). Typically, 0.06–1 μg of antibody was used for staining of approximately 105–107 cells in 100 μL. All samples were analyzed using a BD Accuri C6 or BD LSRFortessa (BD Biosciences, Franklin Lakes, NJ, USA). The data were analyzed using FlowJo software.
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5

Isolation and Analysis of Germinal Center B Cells

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Spleens were collected from WT mice and cells were resuspended in staining buffer (5% FBS in PBS). Red blood cells (RBC) were lysed using ACK lysis buffer (Lonza). To isolate GCBCs, single-cell suspensions from the spleens of immunized mice were labeled with biotinylated antibodies specific for CD43, CD11c and IgD followed by depletion using standard magnetic bead technology (Miltenyi magnetic columns). The resulting unlabeled cells were enriched for GCBCs. Enriched cells were then stained with anti-B220, anti-GL7, anti-CD95, anti-CXCR4, anti-CD83, and viability dye eFluor 506 (eBioscience). GCBC subsets were then isolated by fluorescence activated cell sorting (FACS). For cell cycle analysis cells were stained with FxCycle Violet (ThermoFisher). Cell sorting was performed on a FACSAria II (BD) and flow cytometry was performed on an LSR Fortessa X20 (BD). Flow cryometric analysis was performed using FlowJo (BD).
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6

Multiparametric Flow Cytometry of Lymphocytes

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Cells suspended in PBS supplemented with 0.5% w/v bovine albumin serum (BSA) and 2 mM EDTA were stained with combinations of the following antibodies: anti-CD19 (BD Biosciences, BV421), anti-GL7 (eBioscience, Alexa488), anti-Fas (CD95) (eBioscience, APC), anti-B220 (CD45R) (BioLegend, BV711 & APC, BD Biosciences, BUV496), anti-CD38 (BD Biosciences, BUV395), anti-CXCR4 (eBioscience, PE/Cy7), anti-CD86 (BD Biosciences, BV421, eBiosciences, FITC), anti-IgG1 (eBioscience, PE/Cy7), anti-CD69 (BioLegend, APC), anti-IgM (BD Biosciences, BV711), and anti-MHCII (eBioscience, PE/Cy5). Typically, 0.06–1 μg of antibody was used for staining of approximately 105–107 cells in 100 μL. All samples were analyzed using a BD Accuri C6 or BD LSRFortessa (BD Biosciences, Franklin Lakes, NJ, USA). The data were analyzed using FlowJo software.
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7

Isolation and Analysis of Germinal Center B Cells

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Spleens were collected from WT mice and cells were resuspended in staining buffer (5% FBS in PBS). Red blood cells (RBC) were lysed using ACK lysis buffer (Lonza). To isolate GCBCs, single-cell suspensions from the spleens of immunized mice were labeled with biotinylated antibodies specific for CD43, CD11c and IgD followed by depletion using standard magnetic bead technology (Miltenyi magnetic columns). The resulting unlabeled cells were enriched for GCBCs. Enriched cells were then stained with anti-B220, anti-GL7, anti-CD95, anti-CXCR4, anti-CD83, and viability dye eFluor 506 (eBioscience). GCBC subsets were then isolated by fluorescence activated cell sorting (FACS). For cell cycle analysis cells were stained with FxCycle Violet (ThermoFisher). Cell sorting was performed on a FACSAria II (BD) and flow cytometry was performed on an LSR Fortessa X20 (BD). Flow cryometric analysis was performed using FlowJo (BD).
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8

Western Blot Analysis of Protein Markers

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For the Western blot analyses, cells were lysed in RIPA buffer (Sigma, St Louis, MO, USA). Protein concentrations were determined with a BCA Protein Assay Kit (Pierce, Rockford, IL, USA). Equal amounts of total proteins were separated by 10% SDS-PAGE and transferred to polyvinylidene difuoride membranes (Millipore, Bedford, MA, USA). The membranes were subsequently immunoblotted with the appropriate primary antibody. Anti-AEG-1 was purchased from Abcam Ltd. (Abcam, Cambridge, MA, USA), anti-CXCR4 was purchased from eBioscience Ltd. (eBioscience, San Diego, CA, USA), and antibodies against Akt, phosphorylated Akt (S473), caspase-3, cleaved caspase-3, Bcl-2, Bad, phosphorylated Bad (S99) and GAPDH were obtained from Epitomics company (Epitomics, CA, USA). A secondary anti-rabbit antibody (Promoter Biological Company, Wuhan, Hubei, China) was used for detection with an ECL kit (Pierce) according to the manufacturer's instructions. Bands were scanned and analyzed. Each experiment was repeated three times.
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