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10 protocols using anti caspase 1

1

Investigating NLRP3 Inflammasome Activation

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LPS (Sigma #L4391), adenosine 5'-triphosphate disodium salt hydrate (ATP) (Sigma #A6419), N-acetyl-L-cysteine (NAC) (Glpbio #GC11786) and vitamin C (Glpbio #GC12979) were dissolved in sterile deionized water. The AKT inhibitor MK-2206 (Glpbio #GC16304) was dissolved in dimethyl sulfoxide (DMSO). Anti-NLRP3 (#15101), anti-GSDMD (#93709), anti-phospho-AKT (#4060), anti-phospho-mTOR (#5536) and anti-β-actin (#3700) were obtained from Cell Signalling Technology. Anti-caspase-1 (#PA5-78915) was purchased from Invitrogen. Anti-Nox4 (ab133303) was obtained from Abcam.
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2

Protein Expression and Quantification

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After different treatments, the cells were incubated with RIPA lysis buffer containing a protease inhibitor cocktail on ice for 10 min. Cell lysates were then harvested by scraping, followed by brief sonication and centrifugation at 12,000 × g for 10 min at 4 °C. The protein concentration was determined via the BCA assay. Equal amounts of protein were separated by SDS/PAGE and the bands were electroblotted onto PVDF membranes. The membranes were blocked with 5% non-fat milk dissolved in TBST and then incubated with appropriate primary antibodies overnight at 4 °C. The following primary antibodies were used: anti-NLRP3 (1:1000, Abcam), anti-Gasdermin D-N-terminal (1:1000, Invitrogen), anti-caspase-1 (1:1000, Invitrogen), anti-cleaved caspase-1 (1:1000, Invitrogen), anti-GAPDH (1:10000, Abcam), α-Fodrin (1:1000, Cell Signaling Technology), anti-ATP5A1 (1:1000, Invitrogen), Calpastatin (1:500, ABclonal), and Flag (1:1000, Abcam). The membranes were then incubated with the following horseradish peroxidase-conjugated secondary antibodies: HRP-labeled goat anti-rabbit IgG and HRP-labeled goat anti-mouse IgG purchased from Proteintech (1:5000, America). The immunofluorescent bands were then visualized and quantified using an ECL chemiluminescence kit (Absin, Shanghai, China) and a chemiluminescence–western blotting detection system (Tanon, Shanghai, China).
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3

NLRP3 Inflammasome Activation in Virus-Induced DCs

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1 × 106 of virus-induced DCs were washed with chilled PBS and sonicated in 55 µl of 2× SDS sample buffer (20 mM dithiothreitol, 6% SDS, 0.25 M Tris, pH 6.8, 10% glycerol, 10 mM NaF and bromophenyl blue). The extracts were heated at 95°C for 5 min. Equal quantities of solubilized protein were resolved by 10% SDS-PAGE, blotted to nitrocellulose membrane and probed with following antibodies: anti-NLRP3 (EMD Millipore),, anti-ASC (Apoptosis-associated Speck-like Protein Containing a Caspase Recruitment Domain), anti-caspase-1, anti-cleaved caspase-1 (Cell Signaling) and anti-β-actin antibody (Sigma-Aldrich). Proteins were visualized with SuperSignal West Pico chemiluminescent substrate (Pierce). For co-immunoprecipitation, cells were harvested in RIPA buffer (Sigma Aldrich), and cell lysates were incubated with anti-caspase-1 overnight at 4°C followed by incubation with protein A Dynabeads (Invitrogen) for 2 h. The beads were washed three times with PBS, suspended in Laemmli buffer (62.5mM Tris-HCl pH 6.8, 25% glycerol, 2% SDS, 0.01% Bromophenol blue), boiled for 10 min and spin down. Supernatants were collected and analyzed for the expression of NLRP3 and ASC by immunoblotting.
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4

Immunofluorescence Assay for NLRC4 and Caspase-1

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Immunofluorescence assay was performed as described in research by Hou et al [18 (link)]. Sections were permeabilized with Triton X-100 (0.1%) and blocked with solution containing 5% bovine serum before applying primary antibody. Specimens were incubated respectively with anti-NLRC4 (Invitrogen, cat #PA5-88997; 1:100) and anti-caspase-1 (Invitrogen, cat #MA5-32909; 1:100) for 12 hours in 4°C. Secondary antibodies (Life Technologies, catalog #A21207; 1:200) and Alexa Fluor 488 goat anti-mouse IgG (LifeTechnologies, catalog #A11001) were incubated subsequently under light-protected conditions for 1 h at room temperature. Nucleus were staining with DAPI (KeyGen Biotech, catalog #KGA215–10) in the end. After final washing, the cover slips were mounted on slides using 50% glycerin. Then the sections were observed under a fluorescence microscope (Olympus) or confocal laser scanning microscope (Olympus).
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5

Inflammasome Activation Pathway Analysis

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BMDMs or hiPCS macrophages were lysed in RIPA buffer containing protease inhibitor on the ice for 30 min and then centrifuged at 14,000×g for 5 min. Protein lysates were separated by 4–20% gradient SDS-PAGE and transferred to nitrocellulose membranes. Then the membranes were blocked with 5% non-fat milk in TBS-T and incubated with primary antibodies, anti-Caspase-1 (14-9832-82, eBioScience, 1:2000 for mouse and Cell signalling 3866 T, 1:1000 for human), anti-GSDMD (Genentech, 1:1000), anti-NLRP3 (15101S, Cell Signalling, 1:1000), anti-IL-1β (Cell signalling 12426S, 1:1000) and β-actin (cell signalling 4970S, 1:5000) at 4 °C overnight and detected using HRP-conjugated secondary antibodies.
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6

Caspase-1 Activity Assay in Macrophages

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The Caspase-Glo 1 assay (Promega) was used to measure the activity of caspase-1 in J774.1 macrophages either infected with M. tuberculosis at an MOI of 5 or treated with nigericin, an NLRP3 inflammasome inducer, at a final concentration of 20 μM. After 4–6 hours of infection or nigericin treatment, unprocessed cell samples were mixed at a 1:1 volume ratio with assay reagent in 96-well opaque plates, and the activity of caspase-1 in each sample was measured according to the manufacturer’s protocol. In brief, after 90 minutes of incubation at room temperature, luminescence produced by caspase cleavage of the Z-WEHD substrate was read on a standard plate reader. A caspase-1–specific inhibitor (Ac-YVAD-CHO) was added to parallel samples to confirm specific activity, and wells without cells were run to control for background signal. The values from both the Ac-YVAD-CHO and blank control were subtracted from the Z-WEHD substrate sample value, representing caspase-1 activity.
Immunoblots of cell lysates were probed with the following antibodies: anti-MDA5 (Cell Signaling Technology 3743), anti-LC3 (Cell Signaling Technology 12741), anti–caspase-1 (eBioscience 5B10), or anti–β-actin–HRP (Abcam 49900).
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7

Caspase-1 Activity Assay in Macrophages

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The Caspase-Glo 1 assay (Promega) was used to measure the activity of caspase-1 in J774.1 macrophages either infected with M. tuberculosis at an MOI of 5 or treated with nigericin, an NLRP3 inflammasome inducer, at a final concentration of 20 μM. After 4–6 hours of infection or nigericin treatment, unprocessed cell samples were mixed at a 1:1 volume ratio with assay reagent in 96-well opaque plates, and the activity of caspase-1 in each sample was measured according to the manufacturer’s protocol. In brief, after 90 minutes of incubation at room temperature, luminescence produced by caspase cleavage of the Z-WEHD substrate was read on a standard plate reader. A caspase-1–specific inhibitor (Ac-YVAD-CHO) was added to parallel samples to confirm specific activity, and wells without cells were run to control for background signal. The values from both the Ac-YVAD-CHO and blank control were subtracted from the Z-WEHD substrate sample value, representing caspase-1 activity.
Immunoblots of cell lysates were probed with the following antibodies: anti-MDA5 (Cell Signaling Technology 3743), anti-LC3 (Cell Signaling Technology 12741), anti–caspase-1 (eBioscience 5B10), or anti–β-actin–HRP (Abcam 49900).
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8

Cardiomyocyte Autophagy Evaluation

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To observe autophagic activity in the cardiomyocytes, sections immunostained with primary antibodies at 10 μg/mL were anti‐LC3 (MBL International, Woburn, MA, US), anti‐NLRP3 (Thermo Fisher Scientific, Pleasanton, CA, US), anti‐Caspase‐1 (Thermo Fisher Scientific, Pleasanton, CA, US), and followed by Alexa 568 (red, Molecular Probes, Sunnyvale, CA, US). Nuclei were stained with 4′‐6‐diamidino‐2‐phenylindole. All immunostained sections were assessed under a Nikon Eclipse E1000 microscope and Nikon Digital Sight Camera (Nikon Instruments, Tokyo, Japan).
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9

Colon Epithelial Cell Protein Analysis

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Whole-cell lysates were prepared from colon epithelial cells, proteins resolved by SDS-polyacrylamide gel electrophoresis, and then transferred onto nitrocellulose membranes for immunoblot analysis. Primary antibodies used were anti-Cdx2 at 1:1000 dilution (19 (link)), anti–caspase-1 (Thermo Fisher Scientific), anti-NLRP3 (Thermo Fisher Scientific), anti–β-tubulin (Santa Cruz), anti–phospho-ser536NF-κB (Cell Signalling), anti–Il-1β, and anti–β-actin (Santa Cruz). ELISA was conducted on colon epithelial lysates using kits from BD Bioscience as recommended by the supplier.
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10

Western Blotting for Inflammasome Proteins

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For protein sample preparation, cell pellets, and supernatants were extracted as described previously [48 (link)], and 10 µg of extracted protein was used for Western blotting. The primary antibodies used at the following dilutions were as follows: anti-NLRP3 (Abcam) at 1:200; anti-cleaved caspase-1, anti-cleaved-IL-1β, and anti-β-actin (Cell Signaling Technology, Danvers, MA, USA) at 1:1000; anti-caspase-1 (Thermo Fisher Scientific) at 1:500; and anti-IL-1β (Abcam) at 0.2 μg/mL. We used anti-β-actin antibody as a loading control.
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