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3 protocols using af3865

1

Quantitative Western Blotting of Protein Signaling

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Proteins were separated with 4 to 12% bis–tris gels for eEF2 or 7% tris–acetate gel for TNR and transferred to a PVDF membrane. Membranes were blocked and incubated overnight with primary antibodies against pT57-eEF2 (1/1000, 2331, Cell Signaling Technologies), eEF2 (1/1000, 2332, Cell Signaling Technologies), TNR (1/2000, AF3865, R&D systems), alpha-tubulin (1/10,000, ab7291, Abcam), or SPP1 (1/1000, ab8448, Abcam). Membranes were washed and incubated with HRP conjugated secondary antibodies against rabbit IgG (1/10,000, 711-035-152, Jackson Immunoresearch), goat IgG (1/10,000, 705-035-003, Jackson Immunoresearch), or mouse IgG (1/10,000, ab6789, Abcam). Chemiluminescence was detected using ECL substrate and imaged with FlourChem M (Biotechne) or Amersham Imager 600 (GE Healthcare Life Sciences) for membranes from 2D gel. For detection of total eEF2 after detection of p-eEF2, the membrane was stripped with Restore PLUS Western Blot Stripping Buffer (Thermo Fisher Scientific). Quantification was performed using ImageJ software. Contrast was adjusted using adobe illustrator to improve visualization.
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2

Immunolabeling of Extracellular Matrix Proteins

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The following lectins and primary antibodies were used for staining: biotinylated WFA (B-1355, Vector Laboratories; 1:200), mouse anti-PV (clone PARV-19, P3088; Sigma-Aldrich Japan, Tokyo, Japan; 1:1000), mouse anti-aggrecan (Cat-315; MAB1581, MERCK; 1:1000), rabbit anti-aggrecan (AB1031, Millipore, Tokyo, Japan; 1:200), goat anti-tenascin-R (AF3865, R&D Systems, Minneapolis, MN, USA; 1:200), sheep anti-brevican (AF4009, R&D Systems; 1:200), and mouse anti-glutamate decarboxylase (GAD67) (clone 1G10.2, MAB5406; Millipore, Bedford, MA; 1:1000).
The following secondary antibodies were used for visualization: Alexa Fluor 488-conjugated goat anti-mouse immunoglobulin (Ig)G (ab150113; Abcam, Cambridge, MA; 1:1000), FITC-conjugated anti-mouse IgM (sc-2082, Santa Cruz Biotechnology, Santa Cruz, CA, 1:1000), Texas Red-conjugated goat anti-rabbit (TI-1000; Vector Laboratories, Funakoshi Co., Tokyo, Japan), DyLight488-conjugated horse anti-goat IgG (DI-3088; Vector Laboratories; 1:500), Alexa Fluor 488-conjugated donkey anti-sheep IgG (A-11015; Thermo Fisher Scientific, Kanagawa, Japan; 1:1000), and streptavidin-conjugated Alexa Fluor 594 (S11227, Thermo Fisher Scientific; 1:1000).
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3

Quantifying TNR Expression in DRG Neurons

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Formalin fixed paraffin embedded DRG tissue sections were deparaffinized and subject to citrate buffered antigen retrieval. Sections were stained using a primary antibody raised against TNR (1/50, AF3865, R&D systems) and secondary antibody conjugated to Rhodamine Red-X raised against goat IgG (1/100, 705-296-147, Jackson Immunoresearch). Sections were also stained with antibody raised against NeuN and conjugated to Alexa Flour488 (1/100, MAB377X, Sigma Aldrich). Sections were mounted using DAPI fluoromount-G (17984-24, Electron Microscopy Sciences). Fluorescence was imaged using a Nikon A1R HD25 Spectral microscope. Representative images at 10× magnification were used for analysis, images for figures were acquired at 20× magnification. The proportion of NeuN expressing cells which are also surrounded by TNR was compared between groups.
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