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4 protocols using ab32372

1

Western Blot Analysis of Protein Markers

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Briefly, cells were lysed in RIPA lysis buffer (P0013B, Beyotime Institute of Biotechnology, Nantong, China) at 48 hr following transfection as described below and protein concentration was determined by the BSA method (Beyotime Institute of Biotechnology). Equivalent quantities of protein were separated on a 10% SDS‐polyacrylamide gels and then transferred to Polyvinylidene Fluoride (PVDF) Membrane. Membranes were blocked using 5% non‐fat milk and incubated overnight with the appropriate primary antibody. The next day, they were washed three times with TBST and incubated with a HRP‐conjugated secondary antibody (Beyotime Institute of Biotechnology) at 1:5,000 dilution for 1 hr at room temperature. Protein detection was performed using the enhanced chemiluminescence (ECL) system (Millipore, Bedford, MA). Primary immunoblotting antibodies were: anti‐β‐Actin(dilution 1:1,000, 4,970, Cell Signaling Technology, Danvers, MA), anti‐DPP9(dilution 1:1,000, ab42080, Abcam, Cambridge, MA), anti‐p53 (Epitomics, Burlingame, CA), anti‐BAX(dilution 1:1,000, ab32503, Abcam), anti‐APAF1(dilution 1:1,000, ab32372, Abcam), anti‐MUC1(dilution 1:1,000, ab45167, Abcam), anti‐S100A4(dilution 1:1,000, ab124805. Abcam), anti‐E‐caderin(1:50, ab1416), anti‐vimentin (1:1,000, ab92547, Abcam).
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Western Blot Analysis of APAF1 Protein

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Total proteins were extracted from tissue samples or cultured cells with SDS lysis buffer (Beyotime Institute of Biotechnology, Haimen, China) on ice for 20 min and the protein concentrations were determined using BCA protein assay kit (Pierce, Rockford, IL, USA). Equal amounts of total proteins were separated by 10% SDS-polyacrylamide gel electrophoresis (SDS-PAGE) at 120 V for 2 h, transferred to 0.22 µm polyvinylidene difluoride membranes (PVDF) (Millipore, Billerica, MA, USA) and incubated with APAF1 antibodies (1:1,000, ab32372; Abcam). Proteins were detected by enhanced chemiluminescence (ECL) as described by the manufacturer (Beyotime Institute of Biotechnology) and the intensity of the bands was quantified by densitometry (Quantity One software; Bio-Rad Laboratories, Hercules, CA, USA). Results were normalized to a constitutive expression gene, GAPHD (1:2,000, ab9485; Abcam).
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3

Immunohistochemical Analysis of Apoptosis Markers

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Immunohistochemistry (IHC) of XIAP (E3 ubiquitin-protein ligase XIAP), FADD (FAS-associated death domain protein), APAF-1 (apoptotic protease-activating factor 1) and cleaved Caspase-3 was conducted on five colo320 tumor xenograft tissues treated by PBS, GCV (resolved in PBS solution), BF, BF + GCV and BF-rTK + GCV, respectively (with three replicates). Retrieved tissues were fixed, decalcified in 10 % formalin and embedded in paraffin 24 h posttreatment. Serial sections of the embedded specimens were stained with hematoxylin and eosin (H & E). The fixed tissues of colo320 intestinal tumor were blocked and incubated with XIAP antibody (ab21278, abcam), FADD antibody (ab52935), APAF-1 antibody (ab32372) and cleaved Caspase-3 antibody (ab52293). After being washed, tissues were incubated with biotin-labeled secondary antibody for 30 min, followed by incubation with streptavidin-HRP conjugate for 20 min at RT. The presence of the expected protein was visualized by DAB staining and examined under a microscope. Stains with control IgG were used as negative controls.
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4

Western Blot Analysis of Apoptosis Markers

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Samples of tissues and cultured cells were lysed in RIPA sample buffer and centrifuged at 12 000 × g for 10 min at 4°C. The supernatant fraction was collected, and the protein concentration was determined by a BCA assay (Pierce, Rockford, IL, USA). Proteins were fractionized on SDS-polyacrylamide gels and transferred to polyvinylidene difluoride membranes. The membranes were blocked for 1 h, followed by an overnight incubation at 4°C with antibodies. After washes, membranes were incubated at room temperature for 1 h with the appropriate secondary antibody conjugated to horseradish peroxidase and detected with an enhanced chemiluminescence reagent (Cell Signaling Technology Inc., Danvers, MA, USA). The intensity of each band was scanned and quantified using BandScan software (Glyko Inc., Novato, CA, USA). The following antibodies were used: anti-Apaf-1 (rabbit, 1 : 500, Abcam, ab32372, Cambridge, MA, USA) and anti-cleaved caspase-3 (rabbit, 1 : 1000, Cell Signaling Technology Inc., 9661).
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