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Amicon ultracel 3k centrifugal filter unit

Manufactured by Merck Group

The Amicon Ultracel-3K centrifugal filter unit is a laboratory device designed for the concentration and desalting of macromolecular samples. It utilizes a low-binding, regenerated cellulose membrane with a nominal molecular weight limit (NMWL) of 3,000 Daltons to selectively retain and concentrate molecules of interest while allowing smaller molecules and salts to pass through.

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4 protocols using amicon ultracel 3k centrifugal filter unit

1

Isotopic Labeling and Purification of MLV IN CTD

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Protein expression and purification from the pET-based construct for MLV IN CTD was performed as previously described (15–18 (link)) with the following modifications: protein expression was induced with 1 mM IPTG at 17°C for 25 h. Induction was carried out in MJ9 media (17–18 (link)) in the presence of either 15N-labeled ammonium chloride or 15N ammonium chloride plus uniformly 13C-enriched glucose. Following Ni-NTA resin purification (Qiagen) as per manufacturer's instructions, fractions eluted in 400 mM imidazole were pooled and concentrated to a volume of less than 250 μL using an Amicon Ultracel-3K centrifugal filter unit (Millipore). The concentrated protein fraction was then injected into an AKTA FPLC and resolved on a Superdex 75 gel filtration column (GE Healthcare) in 20 mM sodium phosphate pH 8.0, 300 mM NaCl, 50 mM potassium glutamate (KC5H8NO4) and 5 mM 2-mercaptoethanol. The eluted fractions were then pooled and concentrated using an Amicon Ultracel-3K centrifugal filter unit (Millipore). All isotopes were purchased from Cambridge Isotopes Laboratories.
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2

Purification of C-terminal CREB3L2

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HEK293 cells were cultured to approximately 50% confluency and transfected for 24 h with a plasmid encoding C-terminal CREB3L2 followed by a hexa-histidine tag. Cells were lysed in cold RIPA buffer supplemented with protease and phosphatase inhibitors (Pierce). The lysate was collected on ice and passed through a 21G1 needle followed by a 25G5/8 needle three to five times to shear DNA. The lysates were centrifuged at 4°C for 20 minutes at 12,000 rpm and the supernatant containing C-terminal CREB3L2 was collected. The C terminus was purified using HisPur Ni-NTA resin (Thermo) according to the manufacturer instructions for purification of His-tagged proteins by batch method. The final elution was desalted using an Amicon Ultracel-3K centrifugal filter unit (Millipore) and the purified product was measured by BCA analysis (Pierce) and confirmed by Western.
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3

Cell Fractionation by Size-Exclusion Chromatography

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SEC was performed using an AKTApurifier FPLC System according to the manufacturer’s instructions (GE). Cells were washed twice with PBS and resuspended in hypotonic buffer (20 mM Hepes- KOH, 10 mM KCl, 1 mM MgCl2, 1mM EDTA, 1 mM EGTA, 1 mM DTT, pH 7.5) supplemented with protease inhibitors (Complete Mini, Roche) and phosphatase inhibitors (PhosSTOP, Roche). Resuspended cells were subjected to three rounds of freeze thawing in liquid nitrogen. Debris was removed by centrifugation at 10,000×g for 20 min at 4 °C, followed by filtration at 0.2 μm. The column was equilibrated with gel filtration buffer (150 mM NaCl, 20 mM Hepes- KOH, 10 mM KCl, 1 mM MgCl2, 1 mM EDTA, 1 mM EGTA, 1 mM DTT, pH 7.5). Whole cell lysates (5 mg) were applied to a S400 (HiPrep 16/60 Sephacryl) gel filtration column (Amersham Biosciences). Samples were eluted at 1 ml/min collected at every 0.75ml and monitored with an online detector at 280 nm. Every fifth sample was then concentrated using Amicon® Ultracel® 3K centrifugal filter units (Millipore) and analyzed by western blot.
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4

Subcellular Fractionation by SEC

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SEC was performed using an AKTApurifier FPLC System according to the manufacturer’s instructions (GE). Cells were washed twice with PBS and resuspended in hypotonic buffer (20 mM Hepes- KOH, 10 mM KCl, 1 mM MgCl2, 1mM EDTA, 1 mM EGTA, 1 mM DTT, pH 7.5) supplemented with protease inhibitors (Complete Mini, Roche) and phosphatase inhibitors (PhosSTOP, Roche). Resuspended cells were subjected to three rounds of freeze thawing in liquid nitrogen. Debris was removed by centrifugation at 10,000×g for 20 min at 4°C, followed by filtration at 0.2 μm. The column was equilibrated with gel filtration buffer (150 mM NaCl, 20 mM Hepes- KOH, 10 mM KCl, 1 mM MgCl2, 1 mM EDTA, 1 mM EGTA, 1 mM DTT, pH 7.5). Whole cell lysates (5 mg) were applied to a S400 (HiPrep 16/60 Sephacryl) gel filtration column (Amersham Biosciences). Samples were eluted at 1 ml/min collected at every 0.75mL and monitored with an online detector at 280 nm. Every fifth sample was then concentrated using Amicon®Ultracel® 3K centrifugal filter units (Millipore) and analyzed by western blot.
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