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Complete lysis m

Manufactured by Roche
Sourced in Germany, Switzerland, United States, United Kingdom

Complete Lysis-M is a reagent kit designed for the efficient lysis and extraction of nucleic acids from various sample types. The kit contains all the necessary components to perform a complete lysis and nucleic acid purification process in a streamlined manner.

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53 protocols using complete lysis m

1

Plasma EV Isolation and Multiplex Protein Profiling

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The complete measurement methods are described elsewhere.7 (link) EVs were isolated using ExoQuick (SBI) according to the manufacturer's protocol. Briefly, 150 µL EDTA plasma was centrifuged for 15 min at 3000g. The supernatant was filtered over a 0.45 µm Spin-X filter (Corning), which was flushed with preheated phosphate buffered saline (37°C) and 38 µL ExoQuick solution was added to the filtrate. After vortexing, the sample was stored overnight at 4°C. The following day, the sample was centrifuged at 1500g for 30 min at room temperature. After removing the supernatant, the pellet was lysed in 100 µL Roche Complete Lysis-M with protease inhibitors (EDTA free). Subsequently, the sample was filtered over a 0.22 µm Spin-X filter (Corning) and protein level was determined using a Pierce BCA Protein Assay Kit (Pierce Biotechnology, Rockford, USA) before storing the sample at –80°C. After thawing, the lysed sample was diluted 20× with Roche Complete Lysis-M buffer. Of this diluted sample, 50 µL was analysed in a multiplex immunoassay on levels of cystatin C, serpin G1, serpin F2 and CD14, using a Bio-Rad Bioplex 200 system as described elsewhere.29 (link) Capture antibody, biotinylated detection antibody and antigen of all four proteins were purchased from research and development systems.
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2

EV Isolation and Multiplex Analysis

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EVs were isolated using Exoquick™ (SBI) according to the manufacturer’s protocol described previously [18 (link)]. Briefly, 150 μl EDTA plasma was centrifuged for 15 min at 3000×g. The supernatant was filtered over a 0.45 μm Spin-X filter (Corning), which was flushed with preheated PBS (37°C) and 38 μl Exoquick™ solution was added to the filtrate. After vortexing, the sample was stored overnight at 4°C. The following day, the sample was centrifuged at 1500 × g for 30 min at room temperature, and the pelletwas lysed in 100 μl Roche Complete Lysis‒M with protease inhibitors (EDTA free). The sample was filtered over a 0.22 μm Spin-X filter (Corning) and protein concentration was determined using a Pierce® BCA Protein Assay Kit (Pierce Biotechnology, Rockford, USA), in order to correct the amount of measured EV-marker for the total amount of protein present in the EVs. Samples were stored at −80°C. After thawing, the lysed sample was diluted 20x with Roche complete Lysis-M buffer, and 50 μl was analysed in a multiplex immunoassay on levels of cystatin C, serpin G1, serpin F2 and CD14 using a Biorad Bioplex 200 system as described before [29 (link)]. Capture antibody, biotinylated detection antibody and antigen of all 4 proteins were purchased from R& D systems. A full description of preceding biomarkers proteomics discovery work is provided previously [18 (link)].
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3

Investigating Omega-3 Fatty Acids and Oxaliplatin Effects on Cancer Cell Lines

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The cell lines (OE19 and OE33) were seeded at 1.5 X 105 cells per 75 cm flask and allowed to adhere overnight. Cells were then treated with EPA, DHA, Omegaven® or Oxaliplatin at concentrations of 10 μM and 50 μM and incubated for 72 and 96 h.
After 72 and 96 h, all flasks were removed from the incubator and placed on ice. Cells were gently scraped using a sterile cell scraper, media containing cells was collected and cells pelleted (400 x g, 4 °C, 3 min). The supernatant was discarded, and the remaining cell pellet washed with 1 mL PBS. Cells were again pelleted, the PBS carefully aspirated and 100 μL of Roche Complete Lysis M (Roche Ltd., UK) cell lysis buffer added to the cell pellet. The pellet was mixed by vigorous pipetting and the cells lysed on ice for 10 min. Cell debris was pelleted and the supernatant stored at − 80 °C for later analysis of total Akt, Erk1/2, p53 and p21 proteins.
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4

Diabetic Mice Tissue Harvesting

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All animal studies were performed under a protocol approved by the Institutional Animal Care and Use Committee at Wright State University. Six‐week‐old male db/db diabetic mice (C57BL/KsJ (BKS.Cg‐Dock7m +/+ Leprdb/J) and their age‐matched nondiabetic lean control mice (db/m) were obtained from Jackson Laboratories (Bar Harbor, ME, USA). Mice were housed individually in cages with ad libitum access to food and water and maintained at room temperature (22°C) with 12:12 hr light‐dark cycles. For tissue acquisition for histology, mice were deeply anesthetized with sodium pentobarbital (60 mg/kg, administered intraperitoneally) and then perfused transcardially with cold PBS and 4% paraformaldehyde. Every effort was made to minimize suffering and pain. For tissue acquisition for western blot, ELISA and enzyme activity, mice were euthanized by decapitation and kidneys were dissected and stored at –80°C.
Kidney tissues from NEP gene knockout mice (NEP−/−) and their littermate wild‐type (NEP+/+) were obtained from Dr. Bao Lu (Harvard Medical School). The kidney tissues were homogenized on ice in phosphate‐buffered saline (PBS) containing protease inhibitor (Complete lysis M, Roche diagnostics). Homogenates were then centrifuged at 10,000g for 10 min at 4°C to remove cellular debris. The supernatants were collected, aliquoted, and stored at (−80°C).
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5

Western Blot Analysis of Autophagy Markers

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Protein from cell lines was isolated with M-PER Mammalian Protein Extraction Reagent (78501, Thermo Scientific, MA, USA). Protein from prostate cancer tissue was extracted with Complete Lysis-M (13354520, Roche, Mannheim, Germany). Protein concentration was determined by the BCA method (23225, Beyotime, Shanghai, China). Proteins were separated using 6-12% SDS-PAGE and transferred onto nitrocellulose membrane (10401396, GE healthcare, OH, USA). The membranes were blocked by blocking buffer (927-40000, Odyssey, MA, USA) for 1 hour and then incubated in the primary antibodies at 4°C overnight. After washing with TBST, the membranes were incubated with secondary antibodies at room temperature for 1 hour. Protein bands were visualized by infrared imaging system (Odyssey) and quantified with Odyssey application software. Rabbit anti-LC3B, SQSTM1, ATG7, MTOR, p-P70S6k, and cleaved CASP3 antibodies were purchased from Cell Signaling Technology, MA, USA (2775, 5114, 8558, 2983, 9208, 9664). Anti-GAPDH antibody was purchased from Abcam, Cambridge, UK (9485).
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6

Curcumin Nicotinate Modulates Cell Death

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Mouse monoclonal anti-β-actin, rabbit polyclonal anti-bcl-2, rabbit polyclonal anti-Puma, rabbit polyclonal anti-cleaved-Bid, rabbit polyclonal anti-Bak, rabbit polyclonal anti-cleaved PARP, rabbit polyclonal anti-p53 and rabbit polyclonal anti-P21 antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Horseradish peroxidase linked secondary sheep anti-mouse and rabbit anti-horse IgG were obtained from GE Healthcare (Chicago, IL, USA). Propidium iodide (PI) and Annexin V were purchased from BD Pharmingen (Franklin Lakes, NJ, USA). Complete lysis-M was purchased from Roche Applied Science (Indianapolis, IN, USA). AO/EB nuclear dyes were purchased from Beyotime (Shanghai, China). Curcumin, niacin, 3-[4–dimethylthiazol-2-yl]-2, 5-diphenyltetrazoliumbromide (MTT) and other chemicals were purchased from Sigma-Aldrich (St Louis, MO, USA). Curcumin nicotinate (CN) was in-home synthesized. For experimental uses, CN was dissolved in DMSO at 10 mM as stock solution and then diluted to concentrations indicated.
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7

LPS-Induced NFκB Translocation in THP-1 Macrophages

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After 35 min of stimulation THP-1 macrophages with LPS, the medium was aspirated, and the cells were washed with ice-cold PBS twice. Afterwards, the cells were lysed with cOmplete™ Lysis-M (Roche, Basel, Switzerland) containing Protease and Phosphatase inhibitor cocktail (Roche, Basel, Switzerland) and centrifuged at 14,000g for 15 min at 4 °C. For NFκB p65 nuclear translocation after LPS stimulation the cells were lysed using Mammalian Nuclear and Cytoplasmic Protein Extraction Kit (SERVA, Heidelberg, Germany). The total protein concentration of the cell and nuclear lysates was quantified with BCA protein assay kit (Bio-Rad, Hercules, CA, USA) using BSA as a standard. After equilibration of protein concentration between the samples, the lysates were boiled with 4xLaemmli Sample Buffer (Bio-Rad) and stored in − 20 °C.
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8

FOXM1 Protein Expression in Angiosarcoma

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Angiosarcoma cells were incubated with lysis buffer (Complete Lysis-M, Roche Applied Science, Indianapolis, IN, USA). The lysate protein concentration was measured using a BCA Protein Assay kit (Pierce, Rockford, IL, USA). Equal amounts of protein (20 µg) were dissolved in NuPage LDS Sample Buffer (Invitrogen) and 10% NuPage Sample Reducing Agent (Invitrogen). Lysates were boiled at 98°C for 2 minutes and loaded and run on 4-12% NuPage Bis-Tris Gels (Invitrogen) at 200 V for 40 minutes. The proteins were transferred onto polyvinylidene fluoride membranes (Invitrogen) and blocked in 2% bovine serum albumin in 0.1% Tween-20 (Sigma-Aldrich) and Tris-buffered saline. The membranes were probed with anti-FOXM1 antibody (1:100, Santa Cruz) overnight at 4°C. The secondary antibody used was anti-rabbit horseradish peroxidase-conjugated IgG antibody. Anti-human actin mouse monoclonal antibody (1:4000, Millipore) was used as a loading control. Protein bands were detected using the ImageQuant LAS 4000 system (GE Healthcare).
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9

Western Blot Analysis of Protein Expression

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Cells were incubated for 5 min in lysis buffer (Complete lysis M; Roche Diagnostics, Basel, Switzerland). The protein concentration in the lysate was measured using a BCA Protein Assay Kit (Thermo Fisher Scientific, Rockford, IL, USA). Equal amounts of protein (20 μg) were dissolved in NuPAGE LDS sample buffer (Invitrogen) and a 10% sample reducing agent (Invitrogen). The lysates were boiled at 70 °C for 10 min and then loaded into and subjected to electrophoresis in NuPAGE 4–12% Bis-Tris gels (Invitrogen) at 200 V for 60 min. The proteins were then transferred onto polyvinylidene difluoride membranes (Invitrogen), and the membranes were blocked with WesternBreeze Blocker/Diluent (Invitrogen). The membranes were then probed with the anti-FLG antibody, anti-OVOL1 antibody, and a mouse monoclonal antibody against human β-actin (anti-β-actin) (Cell Signaling Technology, Danvers, MA, USA) overnight at 4 °C. Horseradish peroxidase-conjugated anti-mouse IgG antibodies (Cell Signaling Technology) served as a secondary antibody. The visualization of protein bands was accomplished with the SuperSignal West Pico Chemiluminescent Substrate (Thermo Scientific) by ChemiDoc touch imaging system (Bio-Rad).
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10

AKR1C1/AKR1C2 Gene Expression Analysis

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RNeasy mini kit was purchased from Qiagen (Valencia, CA, USA). qPCR reagents SuperScript® VILO™ cDNA synthesis kit, TaqMan® Fast Advanced Master Mix, AKR1C1 and AKR1C2 TaqMan® Gene Expression Assay were obtained from Life Technologies (Carlsbad, CA, USA). Complete Lysis-M was obtained from Roche (Indianapolis, IN, USA). Pierce ECL Western Blotting Substrate and Restore Western Blot Stripping Buffer were purchased from Thermo Fisher Scientific (Rockford, IL, UA). NIC (nicotine) was obtained from Sigma Chemical Company (St. Louis, MO, USA).
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