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17 protocols using s 2302

1

Bradykinin-Induced Plasma Coagulation Assay

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Penicillin G sodium salt (1,550 U/mg) and other beta-lactams were from Solarbio Life Sciences (Beijing, China) and Yuanye Biotechnology Ltd. (Shanghai, China), respectively. Icatibant was from MedChemExpress (Monmouth Junction, NJ, USA). S-2302™ was from Chromogenix (Milano, Italy). BK ELISA kit was from DS Pharma Biomedical Co., Ltd. (Osaka, Japan). Kaolin, dextran sulfate sodium salt (DS; Mr ~ 500,000), propranolol, triprolidine, SB290157 and CV3988 were from Sigma-Aldrich (Darmstadt, German). PMX53 and pertussis toxin (PTX) were from GL Biochem Ltd. (Shanghai, China) and Enzo Life Sciences (Farmingdale, NY, USA), respectively. Citrate-anticoagulant standard human plasma and FXII-depleted plasma were from Boatman Biotech Co., Ltd. (Shanghai, China). Antibodies for human FXII and transferrin were from GeneTex Inc. (San Antonio, TX, USA). Shrimp tropomyosin (ST) and its IgE monoclonal antibody (mAb) were prepared as we previously described23 (link). Human plasma was obtained from eight healthy volunteers.
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2

Quantifying FXII/PK Activity on Bacterial Surfaces

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FXII/PK activity on bacterial surfaces exposed to plasma was measured using chromogenic substrate S-2302 (H-D-Pro-Phe-Arg-pNA⋅2HCl; Chromogenix). Ten-milliliter overnight cultures (THB) of the S. pyogenes M49 strains were washed three times with 50 mM Tris–HCl (pH 7.5) and diluted (final concentration, 3 × 107 CFU/ml) in 50 mM Tris buffer. Then, 100 μl of bacterial suspension was mixed with 100 μl of plasma or buffer (control), followed by incubation at 37°C for 30 min. After centrifugation, the pellets were washed three times and suspended in 200 μl of buffer containing 1 mM substrate S-2302. After 60 min at 37°C, the samples were centrifuged, and the absorbance of the supernatants was measured at 405 nm in a microplate reader. Control values (bacteria incubated in buffer) were used as a blank. No endogenous proteolytic activity was measured when S-2303 was incubated with bacteria in the absence of plasma.
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3

Enzymatic Assay for Activated FXIIa

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The study was carried out on HP Workstation with 3.5 GHz processor, 8 GB RAM, and 1 TB hard drive running in Windows operating system, high speed internet (broadband) connection, and uninterrupted and stabilized power supply. Bioinformatics software: Discovery Studio, GraphPad Prism software, and online resources, like NCBI, RCSB, and Enamine database, were used in this study.
Full length-activated FXIIa (a-FXIIa) were obtained from Enzyme Research Laboratories (Swansea, UK). Commercial compounds were obtained from Enamine (KIEV, Ukraine). S2302 (a chromogenic substrate peptide mimic) was obtained from Chromogenix (Epsom, UK).
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4

Activated FXIIa and CTI Characterization

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Full length activated FXIIa (α‐FXIIa) and commercial CTI were obtained from Enzyme Research Laboratories (Swansea, UK). S2302 (a chromogenic substrate peptide mimic) was obtained from Chromogenix (Epsom, UK). A codon‐optimized CTI cDNA was obtained from GenScript (Piscataway, NJ, USA). High‐purity‐grade (> 95%) synthetic peptides were obtained from GenScript. Purity was confirmed by reverse‐phase HPLC and mass spectrometry. DNA primers were obtained from Eurofins MWG (Ebersberg, Germany).
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5

Collinein-1 Enzymatic Activity Assay

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The catalytic activity of the native collinein-1 and rCollinein-mut was evaluated with the chromogenic substrate S-2302 by Chromogenix® (Bedford, MA, USA) for plasma kallikrein (H-D-Pro-Phe-Arg-pNA•2HCl). Substrate hydrolysis was determined by incubating different doses of the proteins (1,25, 2,5, 5, and 10 μg) with 0.4 mM of substrates in Tris-HCl 0.05 M, pH 7.5, containing 0.05 M CaCl2 for 40 min at 37 °C. Substrate hydrolysis was spectrophotometrically monitored at 405 nm using Versa Max Microplate reader (Molecular Devices, Sunnyvale, USA). Assays were performed in a series of three replicates, and the data were fitted with standard errors using GraphPad Prism software, version 5.0 (GraphPad Software, San Diego, USA). Statistical analysis of the results was performed using the Student’s t test or one-way ANOVA method with Tukey’s post-test, comparing all treatments to the negative controls and considering values of p < 0.05 as significant.
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6

Dapptin and FXIIa/PK Activity Assay

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Pooled plasma from four mice/group was incubated with Dapptin and FXIIa/PK activity was determined in a microplate reader by chromogenic substrate S-2302 (Chromogenix). (See Online Supplementary Appendix).
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7

Comprehensive Coagulation Protein Assay

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The following materials were obtained from the indicated sources: human fXIa, fIXa, fXa, thrombin, plasma kallikrein, and activated protein C (aPC) (Hematologic Technologies; Essex Junction, VT); recombinant tissue plasminogen activator (tPA) Alteplase® (Genentech; South San Francisco, CA); human α-fXIIa (Enzyme Research Laboratories; South Bend, IL); recombinant factor VIIa (fVIIa) Novoseven® (Novo Nordisk; Bagsværd, Denmark); Lys-plasmin and chromogenic substrates Spectrozyme FVIIa, Spectrozyme FIXa, Spectrozyme PCa, Spectrozyme tPA (Sekisui Diagnostics; Stamford, CT); S-2302, S-2366, S-2765 (Chromogenix; Milano, Italy); and Pefachrome TH 5244 (Pentapharm; Basel, Switzerland). CTI provided by Gamma (Pushchino, Russia) was extracted from corn, purified with ammonium sulfate, acetone precipitation, trypsin-affinity and ion-exchange chromatography, as described previously [17 (link)]. Luffa cylindrica trypsin inhibitor (LCTI-III) was chemically synthesized (Creative Dynamics; Shirley, NY). All other reagents were from (Sigma-Aldrich; St. Louis, MO) unless otherwise noted.
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8

Characterization of Haemachatus haemachatus Venom

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Lyophilized H. haemachatus crude venom was purchased from South African Venom Suppliers (Louis Trichardt, South Africa). Reagents for thromboplastin time, thrombin time and activated partial thromboplastin time (APTT) were from Helena Laboratories (Beaumont, Texas, USA). Reagents for N-terminal sequencing were from Applied Biosystems (Carlsbad, California, USA). The chromogenic substrates, S-2222, S-2288, S-2238, S-2251, S-2444, S-2366 and S-2302 were from Chromogenix (Milano, Italy). Spectrozyme FIXa was from American Diagnostica Inc (Stamford, Connecticut, USA). Superdex 30 HiLoad (16/60) column and Jupiter C18 (5 μ, 300 Å, 4.6 × 250 mm) were purchased from GE Healthcare (Uppsala, Sweden) and Phenomenex (Torrance, California, USA), respectively. All other chemicals and reagents used were of the highest purity.
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9

Comprehensive Coagulation Factor Assay Protocol

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Serine proteases factor XIa (FXIa), factor IXa (FIXa), factor VIIa (FVIIa), factor X (FX), factor Xa (FXa) and Russell’s viper venom-X activator (RVV-X) were obtained from Haematologic Technologies Inc. (Vermont, USA), factor XIIa (FXIIa) was procured from Merck Calbiochem (Darmstadt, Germany), factor VIII (FVIII) from Creative Biomart (NY, USA), phospholipid blend from Avanti Polar Lipids Inc. (Alabama, USA) and tissue factor Innovin from Siemens (Murburg, Germany). The chromogenic substrates namely spectrozyme (MeSO2-D-CHG-Gly-Arg-pNA.AcOH) was purchased from Sekisui Diagnostics (MA, USA), rest of the substrates like S-2366 (pyroGlu-Pro-Arg-pNA•HCl), S-2302 (H-D-Pro-Phe-Arg-pNA•2HCl), S-2222 (Bz-IIe-Glu(γ-OR)-Gly-Arg-pNA•HCl), S-2765 (Z-D-Arg-Gly-Arg-pNA•2HCl)S-2238 (H-D-Phe-Pip-Arg-pNA•2HCl) and S-2288 (H-D-Ile-Pro-Arg-pNA•2HCl) were procured from Chromogenix (NJ,USA).
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10

Chromogenic Assay for Plasma Coagulation

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Pooled diluted plasma (1:10 in 15 mM HEPES) was incubated with Pep19-2.5, and Dapptin was added for contact activation. In the positive control Dapptin (without peptid) and in the negative control water was added. 1 mM of the chromogenic substrate S-2302 (for PK/FXIIa activity, Chromogenix) or S-2366 (for FXI and Prot.C activity, Chromogenix) were added and the absorbance at 405 nm was measured at 37 °C over a period of 120 min. No endogenous proteolytic activity was measured in the absence of plasma.
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