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Micro mib

Manufactured by Bruker
Sourced in United States

The MICRO MIB is a high-resolution microscope imaging system designed for materials analysis. It provides detailed imaging and elemental analysis of small-scale samples. The system's core function is to deliver high-quality, quantitative data for researchers and analysts.

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4 protocols using micro mib

1

Rapid Identification of Carbapenemase-Producing Enterobacterales

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CARBA SMART selective chromogenic media (bioMérieux, Italy) was used to screen for carbapenemase-producing Enterobacterales. Colonies detected on CARBA SMART were identified with matrix-assisted laser desorption/ionization–time of flight mass spectrometry (MALDI-TOF MS; Bruker Daltonics). According to routine hospitals’ microbiology laboratory protocol implemented to speed up the diagnostic procedures for positive BCs, bacterial pellet obtained from positive BCs was used for bacterial identification by MALDI-TOF MS (Bruker Daltonics). Antimicrobial susceptibility testing was performed with the Vitek 2 automated system (bioMérieux), the SensiTitre system (Thermo Fisher Scientific), or ITGN Micronaut panels (Diagnostika GmbH, now a company of Bruker Daltonics) run on MICRO MIB (Bruker Daltonics), as appropriate.
Subsequent molecular analysis for the search of blaKPC gene was performed for all the strains by the GeneXpert System (Cepheid). When available, details of KPC variants were retrieved according to recently published studies [15 (link), 21 (link), 38–40 ]. As previously reported, strains positive for a blaKPC gene but negative with lateral flow immunoassays (LFIAs) for carbapenemase detection were presumptively considered KPC-31–producing KPC-Kp and defined as KPC-31-like–producing KPC-Kp [41 (link)].
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2

Antimicrobial Susceptibility Testing and Carbapenemase Detection

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Antimicrobial susceptibility testing was performed using ITGN Micronaut panels (Diagnostika Gmbh, Bornheim, Germany, now company of Bruker Daltonics) run on MICRO MIB (Bruker Daltonics, Billerica, MA, USA) and interpreted following the European Committee on Antimicrobial Susceptibility Testing (EUCAST) clinical breakpoint v 9.0 [30 ].
carba SMART selective chromogenic media (bioMerieux Italia, Grassina, Italy) was used to screen for carbapenemase-producing Enterobacterales (CPE). Colonies detected on carba SMART from rectal swabs or on other clinical isolates were identified with MALDI-TOF MS (Bruker Daltonics). Identification of carbanemases (KPC, VIM, imipenase [IMP], NDM, oxacillin-hydrolysing [OXA-48]) was performed using the immunochromatographic (IC) assay NG CARBA (NG Biotech, Guipry, France) according to manufacturer’s instructions. Carbapenemases detected by IC assay were also confirmed by molecular assay, using an in-house-developed multiplex real time PCR probe-based assay, able to simultaneously quickly detect KPC, OXA-48, VIM and NDM [31 (link)].
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3

Rapid Pathogen Identification and Resistance Genes Detection in Blood Cultures

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Microorganisms obtained in our cultures were all identified using a MALDI TOF MS System (Bruker Daltonics, Bremen, Germany), while antimicrobial susceptibility testing (AST) was performed using Micronaut panels (Diagnostika Gmbh, Bornheim, Germany, now a subsidiary of Bruker Daltonics, Billerica, MA, USA) run on MICRO MIB (Bruker Daltonics, Billerica, MA, USA). For some BCs, particularly those from critically ill patients, a molecular assay was performed to produce a result quickly available to the clinician. The BCID syndromic panel was used, namely, ePlex® Panels (GenMark Diagnostics, Inc., Carlsbad, CA, USA). The panels provide pathogen identification and the presence/absence of the main resistance genes after approximately 1 h and 15 min.
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4

Comprehensive Carbapenemase Detection Protocol

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Antimicrobial susceptibility testing (AST) was performed using ITGN Micronaut panels (Diagnostika Gmbh, Bornheim, Germany, now company of Bruker Daltonics, MA, USA) run on MICRO MIB (Bruker Daltonics, Billerica, MA, USA) and interpreted following the European Committee on Antimicrobial Susceptibility Testing (EUCAST) clinical breakpoint v 9.0. Carba SMART selective chromogenic media (bioMerieux, Firenze, Italy) was used to screen for carbapenemase-producing Enterobacteriaceae (CPE). Identification of carbanemases (KPC, VIM, imipenemase [IMP], NDM, oxacillin-hydrolyzing [OXA] 48) was performed using the immunochromatographic (IC) assay NG CARBA (NG Biotech, Guipry, France) according to the manufacturer’s instructions. Carbapenemases detected by IC assay were also confirmed by a multiplex real-time PCR probe-based assay (our patent ID MI2014A000327) designed for the simultaneous detection of KPC, OXA-48, VIM, and NDM in a short time (no longer than 90 min from the extraction of DNA to detection) [30 (link)].
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