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Semi dry electrophoretic transfer cell

Manufactured by Bio-Rad
Sourced in United States, United Kingdom, China

The Semi-dry electrophoretic transfer cell is a laboratory equipment used to transfer proteins or nucleic acids from a gel to a membrane for further analysis. It utilizes an electric current to facilitate the transfer process in a semi-dry environment.

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35 protocols using semi dry electrophoretic transfer cell

1

Western Blot Protein Extraction and Analysis

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HCN cells were harvested and lysed in radioimmunoprecipitation assay buffer (RIPA buffer, Sigma-Aldrich) with 1× protease cocktail inhibitors (Thermo Scientific, Waltham, MA, USA) and 1× phosphatase cocktail inhibitors (Thermo Scientific), 1 mM dithiothreitol and 1 mM phenylmethylsulfonyl fluoride for 30 min on ice. After centrifugation (16,100 × g, 10 min), protein concentrations were measured using the BCA protein assay reagent (Thermo Scientific). Proteins were loaded into the gel and electrotransfered to polyvinylidene difluoride (PVDF) membrane with a semi-dry electrophoretic transfer cell (Bio-Rad, Richmond, CA). Membranes were blocked for 1 h at room temperature in a blocking solution consisting of 5 % nonfat dry milk, 0.1 % Tween 20, and Tris-buffered saline (TBST). The membranes were then incubated overnight with the primary antibodies diluted in the blocking solution and washed three times for 10 min. The membranes were incubated for 1 h at room temperature with peroxidase-conjugated secondary antibodies diluted in blocking solution. After washing, protein expression was detected by using a chemiluminescence detection kit (Thermo Scientific).
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2

Detecting Anti-Tumor Protein Expression

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The expression of anti-tumor molecules endostatin and/or TRAIL by engineered Salmonella bacteria was analyzed by western blotting. When freshly cultured bacteria grew to an OD600 value of 1.0, 2 ml of bacterial culture was taken. Bacterial pellets were obtained after centrifugation (12,000 × g for 10 min) and proteins present in the supernatant medium were precipitated by trichloroacetic acid (TCA; Sanchez et al., 2009 (link)). Bacterial pellets and concentrated supernatant proteins were boiled in 200 μl loading buffer for 10–15 min, and 10 μl of samples were taken for separation by 12% SDS-PAGE gel. Proteins were then transferred to 0.22 μm nitrocellulose membranes using semi-dry electrophoretic transfer cell (Bio-Rad, China). The membranes were probed with mouse anti-endostatin (MA1-40230, Themofisher) or anti-TRAIL monoclonal antibody (ab2219, Abcam), followed by a horseradish peroxidase (HRP)-conjugated anti-mouse IgG secondary antibody (1030-05, Southern Biotech). Immunoreactive proteins were detected using enhanced chemiluminescence (ECL) substrate (BL520A, Biosharp) and visualized by the GelDoc XR+ imaging system (Bio-Rad, China).
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3

Western Blot Analysis of Protein Lysates

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Harvested HCN cells were lysed in radioimmunoprecipitation assay buffer (Sigma-Aldrich, 89901) containing 1 × protease and phosphatase inhibitor cocktails (78444, Thermo Fisher Scientific, Waltham, MA, USA) for 30 min. Every 10 min, the lysates were vortexed. After centrifugation (16,000× g, 20 min), the supernatants were collected. Using a BCA protein assay reagent, the protein concentrations were measured using a BCA protein assay reagent (23225, Thermo Scientific). Typically, 5–10 µg of proteins per well were loaded in an SDS-polyacrylamide gel. After running on an SDS-polyacrylamide gel, proteins were transferred to a polyvinylidene fluoride membrane using a semi-dry electrophoretic transfer cell (BioRad, Hercules, CA, USA) and membranes were blocked for 30 min at room temperature with 5% nonfat dry milk. The primary antibodies were prepared according to the manufacturers’ recommendations and the membranes were incubated with primary antibodies overnight. After washing three times for 10 min each, the membrane was exposed for 1 h with peroxidase-conjugated secondary antibodies diluted in 2.5% blocking solution. The membranes were then processed using a chemiluminescence detection kit (34580, Thermo Scientific). All Western blots were quantified using ImageJ (NIH) software (version 1.54d) and normalized to ACTB.
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4

Proteomic Analysis of Snake Venom

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Venom proteins of both snakes were separated by 12% SDS-PAGE under reducing conditions following Laemmli [48 (link)]. Subsequently, the proteins on the gels were either stained with CBB R-250 or transferred to a PVDF membrane (0.45 μm, Millipore, Cork, Ireland) by the semi-dry electrophoretic transfer cell (Bio-Rad, Hercules, CA, USA). The membrane was blocked with 5% non-fat milk powder in 20 mM TBST and sequentially incubated with commercial G. brevicaudus antivenom (reconstituted in ddH2O and diluted by 2% BSA in 1:2000) at 37 °C for 1 h and HRP-labelled antihorse IgG (1:5000 dilution) at 37 °C for another 1 h. The unbound secondary antibody was thoroughly washed off, and the membrane was treated with Pierce ECL WB substrate according to the operation manual before being exposed to X-ray film. The gel and X-ray film were scanned using a UMax2100 densitometer, and the profiles of the bands were analyzed with Gel-Pro Analyzer 4.0 software (Media Cybernetics, Rockville, MD, USA). Additionally, the protein bands that were strongly recognized or those with high abundance but not recognized by the commercial antivenom were excised and identified by LC-MS/MS following the abovementioned procedure.
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5

Western Blot Protein Detection

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Protein extracts were loaded into 4–20% or 10% Mini-PROTEAN TGX Precast Protein Gels (Bio-Rad, 4561096). Then, it was transferred to polyvinylidene difluoride PVDF membrane for 30 min at 15 V using a semi-dry electrophoretic transfer cell (Bio-Rad, Watford, UK). Blots were probed with the recommended concentration of primary Ab (1:500–1:1000) except for FLYWCH1 (1:200) was used (Prestige Antibodies, Sigma-Aldrich, Gillingham, UK, HPA041001). As suitable, antibodies against β-actin or β-tubulin were used as a loading control.
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6

Arabidopsis Protein Extraction and Immunoblotting

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Seedlings grown on MS plates were collected directly or treated with 1 μM BL for 2 h, or kept in the continuous light or dark conditions for 20 h. The entire seedlings of 10-day-old Arabidopsis plants were collected and ground into powder in liquid nitrogen. SDS sample buffer (2×) was added in the ratio of 1:1 (1 ml of buffer to 1 mg of tissue powder) to extract the proteins. The extracted proteins were then heated at 70°C for 10 min, followed by centrifugation at 12000 g for 10 min. The resulting supernatants were transferred to a new microfuge tube. SDS/PAGE was performed to resolve the protein extracts. After electrophoresis, proteins were transferred to a PVDF (polyvinylidene difluoride) membrane (Millipore) with a semi-dry electrophoretic transfer cell (Bio-Rad) and immunodetected with antibodies recognizing GFP (Clontech) or myc (Sigma).
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7

Protein Extraction and Western Blot Analysis

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The cell lysates were extracted using RIPA buffer (containing enzyme inhibitors including aprotinin, PMSF, leupeptin, NaF, sodium orthovanadate, and sodium pyrophosphate) and then subjected to a gel electrophoresis system. The protein samples were loaded and separated on sodium dodecyl sulfate–polyacrylamide gel. After 1.5 h, the separated proteins were transferred to PVDF blotting membranes by semi-dry electrophoretic transfer cell (Bio-Rad; Hercules, CA, USA). The transferred membranes were incubated with BlockPRO blocking buffer (Ruiguang Rd., Neihu Dist., Taipei, Taiwan) for 1 h and then with different primary antibodies for 2 h, after which they were incubated with a secondary antibody for 1 h. An ECL system was used to detect immune-reactive bands in this study. Densitometry was performed to quantify protein bands by using Visionworks for Windows (San Antonio, TX, USA).
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8

Western Blot Analysis of Antibody Responses

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Resolved proteins were transferred to Hybond-P polyvinylidene difluoride (PVDF) membranes (GE Healthcare, Buckinghamshire, UK) using a Semi-Dry Electrophoretic Transfer Cell (Bio-Rad) according to the manufacturer's instructions. The membranes were subsequently blocked using 5% non-fat milk in 20 mM Tris containing 500 mM NaCl (Tris-buffered saline) and 1% Tween 20 (TBS-T) for 1 h at room temperature. The blocking solution was then discarded and the membranes incubated overnight at 4°C with a 1∶200 dilution of immune sera collected on day 14 post-infection from mice immunized with CW and CP protein preparations. The membranes were then washed six times in TBS-T and antibody binding detected by the addition of goat anti-mouse IgG HRP-conjugated antibody (Pierce Biotechnology Inc., Rockford, IL) diluted 1∶1000 in TBS-T containing 5% non-fat milk for 1 h at room temperature. After six washes in TBS-T, the membranes were briefly incubated with SuperSignal West Dura Extended Duration Substrate (Pierce Biotechnology Inc.) and protein spots detected using a ChemiDoc XRS Camera and Quantity One 1-D analysis software (Bio-Rad).
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9

Western Blot Analysis of Flag-Tagged Proteins

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Whole-cell protein extracts were prepared in Laemmli buffer36 (glycerol 5% v/v, β-mercaptoethanol 2.5%, SDS 1.15% p/v, Tris–HCl 31 mM pH 6.6 and bromophenol blue 0.05%). Protein samples were analyzed by Tris-Glicine-SDS triphasic gels with 16.5% polyacrylamide. Proteins were transferred from the gels to PVDF membranes by using the semidry electrophoretic transfer cell (Bio-Rad) at 15 V during 40 min. For the Western blot analysis, a monoclonal antibody directed against the Flag-epitope (Sigma-Aldrich) diluted 1:10.000 in a solution of PBS, 0.2% Triton and 3% skimmed milk was used. The membranes containing the proteins were incubated with the diluted antibody for 16 h at 4 °C. The membranes were afterwards washed for 10 min with PBS, 0.2% Triton X-100 (Sigma-Aldrich) solution. The washing step was repeated three times. Thereafter, the membranes were incubated with horseradish peroxidase-conjugated goat anti-mouse IgG (Promega) diluted 1:2.500 in a solution of PBS, 0.2% Triton X-100 for 45 min at room temperature. Again, three washing steps of 30 min with PBS, 0.2% Triton solution were performed, and immunodetection of the specific protein was performed by enhanced chemiluminescence by using the Molecular Imager ChemiDoc XRS system and Quantity One software (Bio-Rad).
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10

Western Blot Protein Analysis Protocol

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Cells were lysed in radioimmunoprecipitation assay buffer (Sigma-Aldrich, 89901) containing 1 × protease and phosphatase inhibitor cocktail (Thermo Fisher Scientific, 78441) for 15 min on ice. Following centrifugation (12,000 × g, 15 min), the supernatant was collected and protein concentration was measured using the BCA protein assay reagent (Thermo Fisher Scientific, 23225). Total proteins (10 – 20 μg per lane) were loaded and separated by electrophoresis, and electrotransferred to polyvinylidene fluoride membranes in a semi-dry electrophoretic transfer cell (Bio-Rad). Membranes were blocked for 1 h at room temperature in PBS with 5% nonfat dry milk, 0.1% Tween 20 (Duchefa, P1362). Then the membranes were incubated overnight with the appropriate primary antibodies, followed by 1 h incubation with peroxidase-conjugated secondary antibodies. Protein bands were visualized using a Supersignal chemiluminescence detection kit (Thermo Fisher Scientific, 34080).
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