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6 protocols using akt inhibitor 8

1

Nef Modulation of Monocyte-Derived Macrophages

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MDMs (5 × 106 cells) were treated with recombinant myristoylated Nef protein (rNef) from the SF2 HIV-1 strain (1–100 ng/mL) (cat # PR-382, Jena Bioscience, Jena, Germany). Cell pellets were collected at various times after rNef treatment, washed extensively, and either lysed before Western blot analysis or fixed with BD Cytofix (BD Biosciences, San Jose, CA, USA) for 20 min before flow cytometric analysis. MDMs were treated with the Akt inhibitor VIII (cat # sc-202048A) (0, 25, 50 µM) (Santa Cruz Biotechnology, Santa Cruz, CA, USA) for 2 h before addition of rNef (100 ng/mL) for 30 min.
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2

Characterizing HIV-1 Nef Signaling Pathways

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PBLs (5 × 106 cells) were treated with recombinant myristoylated Nef protein (rNef) from the SF2 HIV-1 strain (100 ng/ml) (cat # PR-382, Jena Bioscience, Jena, Germany). Cell pellets were collected at various times after rNef treatment, washed extensively and either lysed before western blot analysis or fixed with BD Cytofix (BD Biosciences, San Jose, CA) for 20 min before flow cytometric analysis. Some PBLs were treated with the PI3K inhibitors LY294002 (0, 25 μM, 50 μM) or Wortmannin (0, 0.5 μM, 1 μM) (Cell Signaling Technology, Beverly, MA), or with the Akt inhibitor VIII (cat # sc-202048A) (0, 25, 50 μM) (Santa Cruz Biotechnology, Santa Cruz, CA) for two hours before addition of rNef (100 ng/ml) for 30 min.
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3

Insulin-Induced Akt Phosphorylation and ANGPTL3 Regulation

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After isolation, hepatocytes were plated onto 60-mm mouse collagen IV-coated dishes (BioCoat, Becton–Dickinson) at a density of 1 × 106 viable cells/dish in DMEM medium containing 10 % FBS [44 (link)]. They were allowed to attach overnight prior to experiment. After overnight serum deprivation, hepatocytes isolated from wide type mice were stimulated with 100 nM insulin or PBS for 10 min and Akt phosphorylation was assessed by western blot. To further confirm whether insulin could induce Akt phosphorylation in diabetic hepatocytes, after overnight serum deprivation, cells were incubated with or without 1 μM pAkt inhibitor VIII for 4 h and then stimulated with 100 nM insulin for 10 min.
To evaluate the effect of insulin on ANGPTL3 production, hepatocytes were serum starved for 24 h and then exposed to 100 nM insulin in the presence of absence of 1 μM Akt inhibitor VIII (Santa Cruz, CA, USA) for another 24 h. Cells were collected for western blot to study ANGPTL3 expression. In parallel, HepG2 were maintained in the same culture medium. After they reached 90 % confluency, they were serum starved and treated with 100 nM insulin as murine hepatocytes.
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4

Evaluation of Kinase Inhibitors on Protein Interactions

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Prior to immunoprecipitation, cells were treated for 6 hours with the following inhibitors: MEK1/2 (10 μM, U0126, Cell Signaling), JNK (50 μM, SP600125, Cell Signaling), P38 kinase (10 μM, SB203580, Cell Signaling), AKT (20 μM, AKT inhibitor VIII, Santa Cruz Biotechnology), PKA (40 μM, H-89 Dihydrochloride, Cell Signaling), PI3Kinase (20 μM, LY294002, Cell Signaling), FRAP/mTOR (40 nM, Rapamycin), or DMSO,and cells were washed twice with ice cold 1X PBS and solubilized in RIPA buffer (50 mM Tris–HCl, pH7.4, 150 mM NaCl, 1 mM EDTA, 1% NP-40, 1% Sodium Deoxycholic acid, 0.1% SDS, 50 mM β- glycerophosphate, 10 mM NaF, 0.5 mM DTT). Equal concentration of protein extracts were added to the anti Flag M2 magnetic beads (Sigma) and rotated overnight. Beads were washed 3 times with 1 M RIPA buffer and immunoblotted.
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5

Molecular Signaling Pathway Analysis

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The reagents used in this study were as follows: PPZ and FR180204 (Sigma-Aldrich), Akt inhibitor VIII (Santa Cruz Biotechnologies.), BCI (Merck Millipore), and U0126 (LC Laboratories.). The antibodies used in this study were as follows: Anti-p97/VCP, anti-B-Raf, anti-N-Myc downstream-regulated gene 1 (NDRG1) (GeneTex), anti-cleaved caspase 3 Asp175, anti-pThr202/Tyr204 ERK1/2, anti-pThr308 Akt, anti-pSer473 Akt, anti-pSer241 PDK1, anti-PDK1, anti-pThr346 (NDRG1), anti-pSer217/221 MEK1/2, anti-pSer445 B-Raf, anti-pSer338 C-Raf, anti-ERK1/2, and anti-Akt (Cell Signaling), anti-C-Raf (BD Biosciences).
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6

Growth Factor-Mediated Neuronal Expansion

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Rat ghrelin was obtained from Peptides International (Louisville, KT, USA). NSC expansion media, Dulbecco's modified Eagle's medium (DMEM)/F12 and B27 supplement were obtained from Gibco/Invitrogen. B-27 is an optimized serum substitute developed for low-density plating and long-term viability and growth of CNS neurons (Brewer et al. 1993 ). PD98059, U0126, 230:2 LY294002, rapamycin and cucurbitacin I were obtained from Tocris (Ellisville, MO, USA) and Akt inhibitor VIII was procured from Santa Cruz Biotechnology. All tissue culture reagents were obtained from Gibco/Invitrogen, and all other reagents were purchased from Sigma, unless otherwise indicated.
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