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17 protocols using cd8 clone rpa t8

1

CD8 Antibody Labeling Protocol

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In order to block non-specific Fc-mediated interaction,1 μg of normal Rabbit IgG (ThermoFisher Cat: 31235) is added to the cell sample and incubated for 10 minutes at room temperature. Conventionally, ext., and int. labeled-antibodies are made for staining using the protocols described above (10μg of antibody each); (1) CD8 (clone RPA-T8; Biolegend Cat: 301002) labeled with Atto488 ext. MuSIC probes, (2) CD8 (clone RPA-T8; Biolegend Cat: 301002) labeled with Atto488 int. MuSIC probes, and (3) CD8 (clone RPA-T8; Biolegend Cat: 301002) labeled with CF488A (Biotium Cat: 92446), Antibody concentration is adjusted to 0.25 ug/ul for each sample. The labeled CD8 antibody is added to the cell sample at the appropriate amount as per manufacturer’s recommendations (2μg CD8 antibody / 106 cells) and allowed to incubate in the dark for 20 minutes on ice. Post-incubation, cells are washed twice with 1 ml of cold staining buffer at 300 x g for 5 min. The final cell pellet is resuspended in 0.5 ml of cold staining buffer.
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2

Flow Cytometry Analysis of T Cells and Monocytes

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All CD11b+ myeloid cells were labeled with PE-conjugated anti-CD3 clone SP34 (BD Bioscience) and fluorescein isothiocyanate-conjugated anti-CD11b clone Bear1 (Beckman Coulter, Brea, CA) to assess the selection efficiency. Purified CD4+ T cells were stained with antibodies for HLA-DR clone L243 (BioLegend), CD3 clone SP34-2 (BD Bioscience), CD4 clone OKT4 (BioLegend), CD8 clone RPA-T8 (BioLegend), and TCRγδ clone B1.1 (eBioscience). Cells were stained for 20 min at room temperature in 100 μl phosphate-buffered saline–2% FBS and fixed for 10 min with Fix/Lyse buffer (Becton Dickinson, Franklin Lakes, NJ). After fixation, samples were analyzed in a BD LSRFortessa flow cytometer using DIVA software (Becton Dickinson, Franklin Lakes, NJ). The gating of CD3+ T cells was easily visualized as small CD3+ nonautofluorescent cells. All data were analyzed using FlowJo software. CD4+ T cell and monocyte counts were analyzed as previously described (38 (link)).
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3

Multicolor Flow Cytometry Analysis of T-cell Subsets

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A 100μl aliquot of whole blood was stained with fluorescently-conjugated antibodies specific for human CD3 (clone SP34.2 BD Biosciences), CD4 (clone L200 BD Biosciences), CD8 (clone RPA-T8 BioLegend), CD45RO (clone UCHL1 Beckman Coulter), CD27 (clone M-T271 BD Biosciences), CD38 (clone HB7 BD Biosciences), HLA-DR (clone L243 BD Biosciences), and PD-1 (clone EH12.2H7 BioLegend). Samples were run through TQ-Prep machine (Beckman Coulter) to lyse red blood cells, washed in D-PBS, and fixed in 1.5% formaldehyde. Data were collected by running the samples through multicolor flow cytometry on a LSRII flow cytometer (BD Biosciences), and analyzed with FlowJo software (Treestar Inc.) The gating strategy was as follows:T-cells were identified by forward vs side scatter, excluded of doublets, and further gated on CD3+ cells, which were then subdivided into CD3+/CD4+ and CD3+/CD8+ populations. Those, in turn, were subdivided by receptor status into naïve cells (CD45RO-/CD27+), effector cells (CD45RO-/CD27-), effector memory cells (CD45RO+/CD27-) and central memory cells (CD45RO+/CD27+). Each subset was evaluated for expression of activation markers CD38 and HLA-DR, and for exhaustion marker PD-1.
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4

Isolation and Analysis of Human CX3CR1+ T Cells

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Using lymphocyte separation medium (Corning) density gradient centrifugation, we isolated peripheral blood mononuclear cells (PBMCs). Staining of CX3C chemokine receptor 1 (CX3CR1) in T cells was performed as described before [23 (link), 24 (link)]. In brief, fresh or cryopreserved PBMCs were incubated with Fc block with human immunoglobulin G (IgG) (Sigma) at 12 mg/mL for 20 min. Anti-human CD3 (clone UCHT1), CD8 (clone RPA-T8), and CX3CR1 (clone 2A9-1) antibodies were obtained from BioLegend, and anti-CD4 (clone RPA-T4) antibody was from BD Biosciences for flow cytometry. LSRFortessa (BD) was used for sample acquisition, and FlowJo software v10.1.5 (FlowJo LLC) was used for sample analysis.
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5

Multiparameter Immune Cell Profiling

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CD45 clone Hl30 (eBioscience 47–0459-42), CD3e clone OKT3 (eBioscience 46–0037-42), HLA-DR clone L243 (eBioscience 48–9952-42), CD56 clone CMSSB (eBioscience 46–0567-42), CD56 clone HCD65 (BioLegend 318304), CD19 clone H1B19 (eBioscience 46–0198-42 and 56–0199-42), CD14 clone 61D3 (Invitrogen Q10056; Cohort 1), CD14 clone M5E2 (BioLegend 301836; Cohort 2), CD16 clone 3G8 (BioLegend 302040), CD11c clone 3.9 (eBioscience 56–0116-42), CD85g clone 17G10.2 (eBioscience 12–5179-42), BDCA1 clone L161 (BioLegend 331516), BDCA3 clone AD5–14H12 (Miltenyi 130–090-513), CD4 clone RPA-T4 (BioLegend 300550), CD8 clone RPA-T8 (BioLegend 301040), CD25 clone BC96 (BioLegend 302612), CD25 clone 2A3 (eBioscience 17–0259-42), FoxP3 clone PCH101 (eBioscience 77–5776-40), FoxP3 clone 236A/E7 (eBioscience 25–4777-42), PD-1 clone EH-12 (BioLegend 329930), CTLA-4 clone BNI3 (BioLegend 369606), γδ TCR clone B1.1 (BioLegend 331212), Flt3L (Abcam ab9688).
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6

Multiparametric Flow Cytometry Protocol

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Cells were staining with Ab against cell surface Ag CD3 (clone UCHT1, BD Bioscience), CD8 (clone RPA-T8, Biolegend), PD-1 (clone J105, eBioscience) and CD69 (Clone CH/4, Life technologies). For pentamer staining, a Pro5® MHC class I pentamer was used (A*02:01 YMLDLQPETT, HPV 16 E7 11–20, Proimmune). An amine-reactive viability dye was used to distinguish between live and dead cells (Zombie Aqua Fixable Viability Dye, Biolegend). All samples were acquired on an LSRFortessa (BD Biosciences) flow cytometer, and data were analyzed using FlowJo software (Tree Star).
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7

CFSE-labeled Cell Cytotoxicity Assay

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The day prior to the assay, 3×104 JEG-3 cells were labeled with 1 µM of CFSE (CellTrace, Thermo Fisher) and seeded in flat-bottom 96-well microplates. On the day of the assay, CAR-T cells were added at various E:T ratios to either the plated CFSE-labeled JEG-3 cells or 3×104 CFSE-labeled K562/K562-HLA-G1 cells. After 24 hours incubation, medium was collected and cells recovered, washed and labeled with antibodies against CD4 (clone RPA-T4, Biolegend), CD8 (clone RPA-T8, Biolegend), CD19 (HIB-19, Biolegend), CD25 (clone M-A251, BD Bioscience), CD69 (clone FN-50, BD Bioscience), PD-1 (EH12.2h7, Biolegend) and a viability dye (Invitrogen). For degranulation assays, co-cultures were set-up at an E:T ratio of 10:1. Anti-CD107a (clone eBioH4A3, Biolegend) was added at the start of the experiment, GolgiStop (BD Bioscience) was added after 1 hour. Five hours after the beginning of the assay, cells were collected and labeled with antibodies directed against CD4, CD8, CD19 and a viability dye. Acquisition was performed with a fluorescence-activated cell sorting (FACS) Attune (Thermo Fisher), and results were analyzed with FlowJo software.
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8

Evaluation of CAR-T Cell Functionality

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Co-cultures were set up with CAR-T cells and K562-HLA-G1 cells at an E:T ratio of 10:1 with no IL-2. Twenty-four hours after stimulation, 50 µL of medium were taken, stored for cytokine secretion analysis and replaced by complete RPMI. Seventy-two hours after stimulation, half of the medium was changed with complete RPMI supplemented with 50 U/mL of IL-2. Cells were maintained at 106/mL. Twelve days after stimulation, some cells were used for flow cytometry analysis, whereas the rest was used for a new round of stimulation. A total of three consecutive stimulations were performed. For flow cytometry analysis, cells were labeled with antibodies directed against CD4 (clone RPA-T4, Biolegend), CD8 (clone RPA-T8, Biolegend), CD19 (HIB-19, Biolegend), CD62L (clone DREG-56, BD Bioscience) and CD45RA (clone HI-100, Invitrogen). In these experiments, the phenotype of CAR-T cells and activated NT autologous controls was also established 24 hours prior to the assay. At the end of the experiment, all recovered medium was analyzed for IFNγ, TNFα and IL-2 secretion using a cytometric bead array (CBA) kit (BD Biosciences).
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9

Activation and Cytokine Analysis of CAR T Cells

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The CAR T cells were suspended with pre-warmed R10 medium containing brefeldin A (20 μL/mL, Sigma-Aldrich) and GolgiStop (1.4 μL/mL, BD). The target cells were added into the wells to stimulate the CAR T cells for 6 hr in the incubator. After stimulation, the cells were stained with the viability dye followed by surface staining with CD3 (Clone OKT3), CD4 (Clone OKT4), and CD8 (Clone RPA-T8) antibodies (BioLegend, San Diego, CA, USA). After washing with PBS, the cells were permeabilized with Cytofix/Ctyoperm buffer (BD Biosciences) for 20 min at room temperature and then washed with 1 × BD Perm/Wash buffer twice. Next, the cells were stained with the intracellular antibodies, including TNF-α (Clone MAb11) and IFN-γ (Clone B27; both BioLegend).
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10

Immune Cell Profiling of Peripheral Blood

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PB was obtained in EDTA-containing tubes. Peripheral blood mononuclear cells (PBMCs) were isolated using Lymphocyte Separation Medium (Corning) density gradient centrifugation. Fresh or cryopreserved PBMCs were incubated with anti-human IgG (Sigma). These antibodies were used for flow cytometry or cell sorting: anti-human CD3 (clone UCHT1; BioLegend), CD4 (clone RPA-T4; BD Biosciences), CD8 (clone RPA-T8; BioLegend), CD45 (clone HI30; BD Biosciences), CD56 (cone HCD56: BioLegend), CD19 (clone HIB19 BioLegend), and CX3CR1 (clone 2A9–1; BioLegend) antibodies. Samples were acquired using LSRFortessa (BD Biosciences), and data were analyzed with FlowJo software v10.1.5 (FlowJo LLC).
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