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105 protocols using grp78

1

Western Blot Protein Analysis Protocol

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Total protein concentration was measured using the BCA method, and 50 μg protein per lane was separated by SDS-Polyacrylamide Gel Electrophoresis (SDS-PAGE) on 8% or 10% polyacrylamide gels and transferred to poly vinylidene fluoride (PVDF) membranes. Membranes were incubated with primary antibodies for either 2 h at room temperature or overnight at 4°C. The following antibodies were used (at a 1:1,000 dilution unless otherwise indicated): total eIF2α (#5324; Cell Signaling Technology (CST), Danvers, MA, USA), phospho-eIF2α (#3398; CST), total PERK (#20582-1-AP; Proteintech Group, Chicago, IL, USA), phospho-PERK (sc-32577: Santa Cruz, Dallas, TX, USA), total JNK (#9258; CST), phospho-JNK (#4668; CST), GRP78 (#3216-1; Epitomics, Burlingame, CA, USA), ORP150 (#3905-1; Epitomics), CHOP (sc-575; Santa Cruz) and cleaved caspase-3 (#9661; CST). Equal loading of protein between lanes was confirmed by subsequent immunoblotting of β-actin (1:5,000; Sigma, St Louis, MO, USA). After incubation with horseradish peroxidase-conjugated goat anti-mouse or donkey anti-rabbit antibody (1:5,000; Jackson ImmunoResearch Laboratories, West Grove, PA, USA) for 1 h at room temperature, immunodetection was performed by chemiluminescence.
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2

Antioxidant and Neuroprotective Effects of Resveratrol

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Bovine serum albumin (BSA), 2',7’-Dichlorodihydrofluorescein diacetate (DCFH-DA), resveratrol, and DL-Glyceraldehyde were purchased from Sigma (St. Louis, MO, USA). DMEM/F12 media, fetal bovine serum (FBS), penicillin, streptomycin, and Hanks Balanced Salt Solution (HBSS) were purchased from Invitrogen (Carlsbad, CA, USA). APP 22C11 antibody was purchased from Chemicon (Temecula, CA, USA). Sirt1, NQO-1, and GRP78 antibodies were purchased from Epitomics (CA, USA). APP, Actin antibodies, and enhanced chemiluminescence (ECL) kit were purchased from Millipore (Billerica, MA, USA); and p53, Nrf-2, Ho-1, bcl-2, bax, caspase3, and β-amyloid antibodies were purchased from Santa Cruz biotechnology (Santa Cruz, CA, USA). Nitrocellulose membranes were purchased from PALL corp. (Ann Arbor, MI, USA).
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3

Protein Extraction and Western Blot Analysis

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Cells were lysed in lysis buffer (Beyotime, China) mixed with 1% protease inhibitors (Beyotime, China) to extract total protein. Mitochondrial fractions were extracted using a Cell Mitochondria Isolation Kit (Beyotime, China). The cell medium was centrifuged (800 × g, 5 min), and the supernatant was filtered for the detection of high mobility group box 1 protein (HMGB1), as described previously [17 (link)]. Protein concentrations were determined using a bicinchoninic acid (BCA) protein assay kit (Beyotime, China). Total cell lysates were separated by SDS polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene fluoride membranes (Amersham Biosciences, USA). Blots were probed with the primary antibodies against phosphorylated PKR-like ER kinase (p-PERK, 1 : 1000; CST, USA), GRP78 (1 : 1000; Abcam, UK), CHOP (1 : 1000; Abcam, UK), HMGB1 (1 : 10000; Abcam, UK), PARP (1 : 500; Abcam, UK), VDAC1 (1 : 1000; Abcam, UK), or GAPDH (1 : 1000; Tianjin Sun gene Biotech Co, China) and incubated (with rocking) at 4°C overnight. Membranes were probed with secondary antibodies and visualized using an enhanced chemiluminescence reagent (ECL, Amersham Biosciences, Piscataway, NJ, USA).
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4

Immunocytochemical Analysis of ER Stress Proteins

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The samples were fixed with 4% paraformaldehyde and permeabilized with 0.2% Triton X-100. Next, samples were incubated with primary antibodies against IP3R1 (1 : 500; Invitrogen, UK), VDAC1 (1 : 500; Abcam, UK), AIF (1 : 500; Abcam, UK), CHOP (1 : 500; Abcam, UK), or GRP78 (1 : 500; Abcam, UK) for 1 h at room temperature. Alexa Fluor-conjugated secondary antibodies (1 : 100; Proteintech, China) were added to highlight the primary antibodies. After one hour, the cells were visualized under a laser scanning confocal microscope (LSM; Olympus, Japan).
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5

Endoplasmic Reticulum Stress Response Mechanisms

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All reagents used in this study were commercially available. aFGF was purchased from Key Laboratory of Biotechnology and Pharmaceutical Engineering, Zhejiang, China, and the In Situ Cell Death Detection Kit was purchased from Roche (South San Francisco, CA, USA). Foetal bovine serum and Dulbecco’s modified Eagle’s medium (DMEM) were purchased from Invitrogen (Carlsbad, CA, USA). Antibodies against ATF-6, ATF-4, GRP-78, PDI, XBP-1 and cleaved caspase 12 were purchased from Abcam (Cambridge, MA, USA). Anti-β-actin, CHOP, microtubule-associated protein 2 (MAP-2) and myelin basic protein (MBP) antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Anti-cleaved caspase 3 antibody was purchased from Cell Signaling Technology (Danvers, MA, USA). The appropriate secondary antibodies were purchased from Abcam or Santa Cruz Biotechnology.
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6

Quantification of Apoptosis and Autophagy Proteins in TBI

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Protein levels of apoptotic and autophagy-related proteins in brains of TBI and Sham groups were detected by western blot analysis, using the standard methods we described previously (Luo et al., 2013 (link); Gao et al., 2017 (link)). In brief, each sample, 20 mg of protein, was loaded on a 10% or 12% SDS-PAGE gel using a constant current and then transferred to PVDF membranes on a wet electrotransferring unit (Bio-Rad). Membranes were incubated with antibodies to IL-33 (1:200, R&D), ST2L (1:500, abcam), LC3B (1:3000, Abcam), Beclin-1 (1:1000, Bioworld), P62 (1:1000, Abcam), GRP78 (1:1000, Abcam), Cleaved-Caspase-3 (CC-3; 1:500, Bioworld), Bcl-2 (1:500, Abcam) and β-actin (1:10,000, Sigma). Then, the membranes were washed and incubated with secondary antibodies conjugated to horseradish peroxidase for 2 h at room temperature. Immunoreactive proteins were detected with the ECL chemiluminescence system (Beyotime Institute of Biotechnology) and were obtained by Chemiluminescence Gel Imager. Films were automatically saved and densitometric analysis of the bands was performed with ImageJ.
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7

Western Blot Analysis of Apoptosis-Regulating Proteins

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Control and treated cells were lysed using RIPA lysis buffer (120 mM NaCl, 1.0% Triton X-100, 20 mM Tris–HCl, pH 7.5, 100% glycerol, 2 mM EDTA and protease inhibitor cocktail, Roche, Germany). Total protein (30 μg) was electrophoresed on 10% SDS–polyacrylamide gels and blotted onto PVDF membrane (Millipore, Bedford, MA, USA). After blocking with 5% BSA at room temperature, the blots were probed with one of these antibodies: Par-4 (Cell signaling technologies, Santa Cruz Biotechnology, USA), PARP (Santa Cruz Biotechnology), GRP78 (Abcam, Cambridge, England), Akt, PKCζ, actin (Molecular probes, Invitrogen, USA), pAkt-ser 473, or pPKC ζ (Santa Cruz Biotechnology) overnight at 4 °C. The secondary antibodies were horseradish peroxidase-conjugated goat anti-rabbit IgG and goat-anti-mouse IgG (Bio-Rad, USA). The immunoreactive bands were visualized by chemiluminescence using Super Signal West Femto Maximum Sensitivity Substrate (Pierce, USA). GAPDH and actin were used to normalize levels of proteins detected.
For secretion of Par-4, HNGC-2, LN-18 and G1 cells were exposed to tamoxifen for 24 h and supernatants were collected and concentration (20-fold) was achieved using 30 kDa cut-off filters (Millipore, USA).
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8

Investigating Cellular Stress Response Pathways

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Reagents including tert-Butyl hydroperoxide solution (TBHP), GSK2606414, KIRA6, ba lomycin-A1, tunicamycin (TM), chloroquine (CQ) and dorsomorphin (Compound c, BML-275) were purchased from MCE (Monmouth Junction, NJ, USA) and dissolved in DMSO. Antibodies against sestrin2, NeuN, Tuj1, PERK, ATF4, ATF6, GRP78, PDI, caspase12, p62, Lamp2, p-ULK1 were purchased from Abcam (Cambridge, MA, USA), antibodies against p-PERK, CHOP, CTSB, p-AMPK, AMPK, were obtained from Cell Signaling Technologies (Danvers, MA, USA), antibodies against p62, Lamp2, Bax, Bcl2, GAPDH and ULK1 were acquired from Proteintech (Chicago, IL, USA), an antibody against cleaved caspase 3 was purchased from A nity (Cincinnati, OH, USA), an antibody against LC3 was purchased from Novus (Littleton, Co, USA), antibodies against IRE1α, p-mTOR, mTOR and ubiquitinated proteins were purchased from Santa Cruz Biotechnology (Dallas, TX, USA). Alexa Fluor 488-labeled and Alexa Fluor 647-labeled goat anti-rabbit/mouse/rat secondary antibodies were purchased from Abcam (Cambridge, MA, USA). 4,6-Diami-dino-2-phenylindole (DAPI) was obtained from Beyotime (Shanghai, China). The reagents for PC12 cells and neuron cultures were obtained from Gibco (Grand Island, NY, USA) and Sigma-Aldrich (St. Louis, MO, USA).
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9

Quantitative Analysis of Apoptotic Markers

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20–30 μg of proteins extracted with RIPA buffer were analyzed by SDS PAGE and transferred to a nitrocellulose membrane. Membranes were blocked with 5% non-fat dry milk in 1 × TBST buffer (BioRad, Hercules, CA) and incubated with primary antibodies overnight at 4°C. The following primary antibodies were used at a 1:1000 dilution LC3B, cleaved caspase-3, cleaved caspase-7, BAX, and BCL2 (Cell Signaling Technologies Danvers, MA.), anti-caspase-12, Ire-1α, GRP78, DFF45, and PARP (Abcam, Cambridge, MA). Anti-β-actin (1:500, Sigma-Aldrich, St. Louis, MO) were used as a loading control. Horseradish peroxidase (HRP)-conjugated secondary antibodies (Sigma Aldrich, St Louis, MO) were used and protein bands were visualized by a chemiluminescence method using the SuperSignal West Femto Maximum Sensitivity Substrate kit (Thermo Fisher Scientific, Waltham, MA). Images were analyzed with the ImageJ image processing program version 1.50b (National Institutes of Health, Bethesda, MD) to access the differential expression of key ER stress and apoptotic markers.
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10

Protein Extraction and Western Blot Analysis

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Total proteins were extracted using a total protein extraction kit (KeyGen Biotech.), and protein concentrations were determined using a bicinchoninic acid protein assay kit (Pierce). Each 20 μg aliquot of total protein was loaded in a 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis gel, and then transferred onto polyvinylidene difluoride membranes (Millipore). After complete protein transfer, the membranes were blocked with 5% milk powder solution for 2 h and incubated with primary antibodies overnight. Primary antibodies used in this study included polyclonal GRP78 (Abcam), monoclonal caspase-3, XIAP, and RIPK1 (Cell Signaling) in a 1∶1000 dilution. For internal reference, a monoclonal rabbit anti-rat β-actin antibody (1∶1000 dilution) (Cell Signaling) was used. After washing the membranes, goat polyclonal anti-rabbit immunoglobulin G secondary antibody (Cell Signaling) conjugated to horseradish peroxidase was applied in a 1∶5000 dilution and incubated for 2 h at room temperature. Finally, antibody binding was visualized using the enhanced chemiluminescence system (Pierce).
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