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5 protocols using ab59240

1

Immunoprecipitation Assay with Dynabeads

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The immunoprecipitation assay was performed using the Immunoprecipitation Protein G Dynabeads® kit (Invitrogen, 10007D) according to the manufacturer’s protocol. The antibodies used for immunoprecipitation included anti-SRSF2 antibody (Abcam, ab11826), anti-P300 antibody (Abcam, ab59240), anti-CBP antibody (Abcam, ab50702), anti-STAT3Y705p antibody (Abcam, ab76315), and anti-H3K27AC antibody (Abcam, ab4729).
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2

Western Blot Analysis of Histone Modifications

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Western blot analysis for a specific protein expression was performed. The protein was separated by sodium dodecyl sulfonate polyacrylamide gel electrophoresis (SDS-PAGE). The protein was transferred to a PVDF membrane by the wet transfer. After being blocked 1 hour in room temperature, the membrane was incubated by primary antibodies incorporating anti-histone H3 (ABclonal, A2348, 1 : 5000), anti-GAPDH (ABclonal, A19056, 1 : 5000), anti-panKcr (PTM-501, 1 : 1000), anti-p300 (Abcam, ab59240, 1 : 2000), anti-ASCC2 (Abcam, ab234689, 1 : 2000), and anti-HNRNPA1 (Abcam, ab4791, 1 : 1000) at room temperature for 2 hours and then incubated with HRP-conjugated anti-rabbit (Abcam, 205717, 1 : 5000) and anti-mouse (Abcam, 205718, 1 : 5000) at room temperature for 1 hour.
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RNA Immunoprecipitation Assay with Modifications

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The RNA immunoprecipitation assay was performed basically using the protocol of Peritz et al.52 (link) with some modifications. Briefly, HSV-1 or Mock infected HeLa cells were fixed with 1% formaldehyde and sonicated on ice for 2 cycles at 50% power for 15 s with 2 min pauses between each cycle using a probe sonicator (Sonics & Materials, Inc.). Then, cell lysates were incubated with anti-SRSF2 antibodies (Abcam, ab11826), anti-P300 antibodies (Abcam, ab59240), anti-CBP antibodies (Abcam, ab50702), anti-EZH2 antibodies (Abcam, ab186006), or anti-IgG antibodies (ab205718 or ab205719) at 4 °C overnight. RNA enriched from the immunoprecipitation was retrotranscribed for the real-time PCR. The primers for RT-PCR analysis are listed in Supplementary Table 1.
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4

Immunoprecipitation of SRSF2 interactors

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The immunoprecipitation assay was performed using the Immunoprecipitation Protein G Dynabeads® kit (Invitrogen, 10007D) according to the manufacturer’s protocol. Briefly, HSV-1 or Mock infected HeLa cell lysates were incubated with antibodies against SRSF2 (Abcam, ab11826) and after washing, bound proteins were detected by western blotting with antibodies against PSPC1 (Abcam, ab104238), P54nrb (Abcam, ab70335), P300 (Abcam, ab59240), CBP (Abcam, ab50702), SRSF2 (Santa Cruz Biotechnology, sc-10252), EZH2 (Abcam, ab186006), or beta-actin (Proteintech, 60008-1-Ig).
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5

Investigating Protein Interactions in U251 Cells

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To investigate the interaction between Aβ and CAV2, TGFB2 or TGFBR1, U251 cells were inoculated with β-amyloid (1–42), HiLyte Fluor™ 488-labelled (ANASPEC, AS-60479-01). After 1 h, the cells were washed, fixed and incubated with CAV2 (Abcam, ab133484), TGFB2 (Abcam, ab36495) or TGFBR1 antibodies (Abcam, ab31013). The cells were washed, counterstained with DAPI and observed under an Olympus FV1000 confocal laser microscope. To study the interaction between NEAT1 and P300/CBP, U251 cells were incubated with the NEAT1 probe overnight at 37 °C and then the anti-P300 (Abcam, ab59240) or anti-CBP antibodies (Abcam, ab50702) for 1.5 h at room temperature. After the cells were washed and incubated with the secondary antibody, they were counterstained with DAPI and mounted for observation. Cell images were obtained with an Olympus FV1000 confocal microscope. To study the role of NEAT1 in the interaction between STAT3 and H3K27Ac, U251 cells were transfected with a NEAT1 or negative control siRNA for 36 h and then incubated with the anti-STAT3 Y705 (Abcam, ab76315) and anti-H3K27Ac antibodies (Abcam, ab4729) for 1.5 h at room temperature. After the cells were washed and incubated with the secondary antibody, they were counterstained with DAPI and mounted for observation. Cell images were obtained with an Olympus FV1000 confocal microscope.
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