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2 protocols using ripa bufer

1

Immunoblotting Analysis of Mitochondrial and Synaptic Proteins

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We followed standard immunoblotting procedures. After rapidly thawing on ice slush ice-containing water, rat brain cortical tissues were homogenized in RIPA bufer (Thermo Fisher Scientific) containing Halt protease and phosphatase inhibitors (Thermo Fisher Scientific). Following centrifugation at 10,000×g for 10 min at 4 °C, the supernatants were collected and the protein concentration was determined using the BCA assay. The samples (20 μg of total protein per well) were resolved on 4–12% Bis-Tris NuPAGE gels and transferred to nitrocellulose membranes (0.2-μm pore size). The membranes were then incubated with primary antibodies at 4 °C overnight followed by species-appropriate, horseradish peroxidase (HRP)-linked secondary antibodies at RT for 1 h. The bound antibodies were visualized by the enhanced chemiluminescence method (Pierce) on reflection autoradiography films.
The following antibodies were used: total OXPHOS rodent WB antibody cocktail (#ab110413, abcam); coxIV antibody (#11967, Cell Signaling Technology); TOMM20 antibody (#186734, abcam); VDAC antibody (#4661, Cell Signaling Technology); synaptophysin antibody (#S5678, Millipore Sigma); actin antibody (#A5441, Millipore Sigma), and HRP-linked IgG from rabbit and mouse (7074S and 7076S, Cell Signaling Technology).
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2

Western Blot Analysis of Protein Expression

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Cells were lysed with radioimmunoprecipitation assay buffer (RIPA Bufer, Thermo Scientific) containing protease inhibitors (Complete, Mini; Protease Inhibitor Cocktail Tablets, Roche) and phosphatase inhibitors (PhoStop, Phospatase Inhibitor Cocktail Tablets, Roche) and centrifuged at 13000×g, at 4ºC, for 20 minutes. The protein content of the supernatants was determined with BCA assay system (Pierce). Lysate aliquots (50 μg) were resolved by 8%, 10% or 12% (depending on the protein molecular weight) SDS-PAGE and transferred onto nitrocellulose membranes. After blocking with 5% skimmed milk in PBS containing 0.2% Tween 20 at room temperature for 1 hour, membranes were incubated overnight at 4ºC with the appropriate primary antibody (CAV1 #610059 from BD, FoxO1 #2880, ERK1/2 #4695, phospho-ERK1/2 #4376 from Cell Signaling Technology; CAV3 #sc5310 and Myogenin #sc-12732 from Santa Cruz; MyHC MF 20 from Developmental Studies Hybridoma Bank). Blots were then incubated at room temperature for 1 hour with a horseradish peroxidase–conjugated secondary antibody and the peroxidase activity was detected by enhanced chemiluminescence (Pierce) following the instructions of the manufacturer. Immunodetection of β-actin (#ab49900) from Abcam was used as a loading reference.
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