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Realplex4 system

Manufactured by Eppendorf
Sourced in Germany

The Realplex4 system is a real-time PCR instrument designed for quantitative analysis of nucleic acids. The system features four independent thermal blocks, allowing for simultaneous processing of up to four samples or assays. The Realplex4 system is capable of performing real-time PCR experiments with high precision and sensitivity.

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5 protocols using realplex4 system

1

Quantifying MMP9 and RECK mRNA

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Total RNA was isolated using the TRIzol method and treated with DNase I. One microgram of DNA free total RNA was reverse transcribed using Quantitect cDNA Synthesis Kit. MMP9 and RECK mRNA expressions were analyzed by RT-qPCR using TaqMan1 probes (Applied Biosystems) and Eppendorf Realplex4 system. 18S served as an invariant control. Data are shown as fold change (2−ΔΔCt).
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2

Analysis of Immune Gene Expression

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Total RNA was isolated using the TRIzol method. One microgram of RNA was reverse transcribed using the Quantitect cDNA synthesis kit. TRAF3IP2, cytokine, chemokine and adhesion molecule expression was analyzed by RT-qPCR using TaqMan® probes and Eppendorf Realplex4 system [11 (link), 12 (link), 14 (link)]. Data were shown as fold change (2−ΔΔCt).
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3

Analysis of MMP2, RECK and miR-21 Expression

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Total RNA was isolated using the TRIzol method. One microgram of DNA-free total RNA was used for the first strand cDNA synthesis using Quantitect cDNA Synthesis Kit [15 (link)]. MMP2 and RECK mRNA levels were analyzed by RT-qPCR using Gene Expression TaqMan® probes (Applied Biosystems) and Eppendorf Realplex4 system [15 (link)]. 18S served as an invariant control. Data are shown as fold change (2− ΔΔCt). For miRNA expression, small RNA-enriched total RNA isolated using the mirVana™ miRNA Isolation Kit (Ambion®) was used. miR-21 expression was analyzed by RT-qPCR using miRNA TaqMan® probes (Applied Biosystems). Its expression was analyzed by Northern blotting using radiolabeled StarFire oligonucleotide probes. Radiolabeling of miRNA antisense oligonucleotides was performed with a StarFire labeling kit (IDT, Coralville, IA), according to the manufacturer's instructions. Twenty micrograms of small RNA-enriched total RNA were resolved through 12.5% urea-polyacrylamide gel under denaturing conditions, transferred onto GeneScreen Plus membranes (PerkinElmer, Waltham, MA), UV-cross-linked, pre-hybridized, hybridized, and washed as described. U6 served as a loading control.
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4

Quantitative Gene Expression Analysis

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Total RNA was isolated using the TRIzol method, treated with DNase, and 1 μg of DNA-free total RNA reverse transcribed using the Quantitect cDNA Synthesis Kit (Qiagen). Gene expression was analyzed by RT-qPCR using a TaqMan® probes (thermo Fisher Scientific-Applied Biosystems) for MMP2 (Hs01548727-m1), TIMP3 (Hs00165949-m1), and 18S (Hs03003631-g1) using Eppendorf Realplex4 system. All data were normalized to corresponding 18S rRNA, and expressed as fold change relative to untreated controls. Data are shown as fold change (2-ΔΔCt).
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5

Plum Fruit Development Transcriptomics

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Plant material was collected as previously described [39 (link)]. Briefly, the fruits of the ‘Furongli’ plum were harvested from 6-year-old field-grown trees in Fuda Village, Fujian Province, China. Fruit samples were picked 23, 43, 70, 98, 112, 127, and 157 days after flowering (DAF), respectively. All the trees received the standard horticultural practices and insect prevention. The fruit samples were stored at −80 °C until use. After that, they were peeled and sliced into appropriate pieces and frozen in liquid nitrogen immediately. For qRT-PCR analysis, the total RNA was isolated using the RNA prep Pure Plant Total RNA Extraction Kit (Tiangen, Beijing, China) following the manufacturer’s instructions. First-strand cDNA was synthesized for qPCR using the PrimeScript RT reagent kit with gDNA Eraser (Takara, Dalian, China). The qRT-PCR reactions were conducted in 20 µL volumes, utilizing 1 µL of cDNA and 2 × SYBR Premix Ex TaqTM II (Tli RNaseH Plus, TaKaRa), based on the Eppendorf RealPlex4 system (Hamburg, Germany). The experiment procedures of qRT-PCR were 40 cycles of 95 °C for 15 s and then 68 °C for 30 s. The actin gene was utilized as the control standard, and the 2−ΔΔCT method was employed to analyze the relative expression levels of the genes [40 (link)]. Three biological and three technical replicates were performed. The primer sequences are provided in Table S1.
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