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6 protocols using cdc37

1

Hsp90 Mutant Protein Evaluation

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Plasmids expressing Flag (F)‐Hsp90, K292Q, and K292R mutant were described previously.6The following reagents and antibodies were used: Cdc37, cyclin‐dependent kinase 4 (CDK4), Cyclin D1, Hsp27, p‐(S326)‐Heat shock factor 1, and Serine/threonine‐protein kinase 33 (Abcam, Cambridge, MA, USA); p21Cip1 (BD Biosciences, Sparks, MD, USA); AKT, p‐AKT, caspase‐3, cleaved caspase‐3, caspase‐8, active caspase‐8, caspase‐9, cleaved caspase‐9, p‐Cdc37, CDK2, CDK6, Cyclin D1, Eukaryotic elongation factor 2 kinase, p‐eEF2K (S366), Hsp70‐Hsp90 organizing protein 1, HSF1, MEK1/2, p‐MEK1/2, Erk1/2, p‐Erk1/2, and poly(ADP‐ribose) polymerase (PARP)1 (Cell Signaling Technology, Danvers, MA, USA); Hsp40/Hdj1, Hsp70, Hsp90α, and p23 (Enzo Life Sciences, New York, NY, USA); Platelet‐derived growth factor receptor β (Merck Millipore, Temecula, CA, USA); Raf‐1 (C20) and Activator of Hsp90 ATPase protein 1 (Santa Cruz Biotechnology, Dallas, TX, USA); LBH589, Sim, mevastatin (Mev), pravastatin, anti‐Myc beads (Selleck Chemicals, Houston, TX, USA); mevalonate, anti‐Flag, β‐actin, anti‐M2, and anti‐HA beads (Sigma‐Aldrich, St. Louis, MO, USA); and Transforming growth factor‐β receptor II (Thermo Fisher Scientific, Grand Island, NY, USA). Secondary antibodies were from Jackson ImmunoResearch (West Grove, PA, USA).
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2

Immunofluorescent Protein Detection Protocol

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Sections or cells were fixed with 4% paraformaldehyde, permeabilized with 0.3% Triton X-100, blocked with 5% BSA, and then incubated with indicated antibodies against HA (Santa Cruz, California, USA), AHA1 (Abcam, Cambridge, UK), CDC37 (Abcam) or CD68 (CST, MA, USA) overnight at 4 °C. Alexa Fluor® 488- or 594-conjugated fluorescent secondary antibodies (Life Technologies, Thermo Fisher Scientific) were incubated at 37 °C for 1 h, and nuclei were counterstained with DAPI (Santa Cruz). Images were captured using a confocal microscope (Zeiss LSM 410, Oberkochen, Germany).
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3

Antibody Screening for Cancer Targets

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Antibodies targeting Her2, Cdk6, phospho-Akt (pAkt), and Hsp27 were purchased from Cell Signaling Technology. Antibodies targeting Raf and actin were purchased from Santa Cruz Biotechnology. The remaining antibodies are listed and were purchased from the indicated vendors: Hsp90 (Enzo Life Sciences); Hsp70 (Assay Designs); Cdc37 and p23 (abcam). Gedunin was isolated in house. Celastrol was purchased from Cayman Chemical and geldanamycin was purchased from Sigma Aldrich.
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4

Comprehensive Chemical Reagent Database

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VS-4718 (#S7653), VS-6063 (#S7654), PF-562,271 (#S2890), GSK2256098 (#S8523), vorinostat (#S1047), panobinostat (#S1030), staurosporine (#S1421), and paclitaxel (#S1150) were purchased from Selleck Chemicals. Chemical structures are shown for the FAK kinase inhibitors (VS-4718, VS-6063, PF-562,271, and GSK2256098) and HDAC inhibitors (vorinostat and panobinostat) in Supplementary Fig. 1A. Compound libraries were from BioAscent. Antibodies used were purchased from Cell Signaling Technology (FAK phosphorylated tyrosine-(pY)397, #3283; FAK, #3285; GAPDH, #2118; YAP, #14074; YAP phosphorylated serine-(pS)127, #13008; histone H3, #9715; histone H3 acetylated lysine-56 (K-Ac), #4243; Cdc37, #4793; Cdc37 pS13, #13248; Src, #2109; Axl #8661) or Abcam (YAP, #EP1674Y).
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5

Native Immunoblotting of Protein Complexes

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Cultured cells were lysed in 20 mM HEPES pH 7.5, 50 mM KCl, 5 mM MgCl2, 0.01% NP40, 20 mM Na2MoO4 buffer, containing protease and phosphatase inhibitors. PDX and CDX tumour tissues were lysed by homogenisation in 20 mM Tris pH 7.4, 20 mM KCl, 5 mM MgCl2, 0.01% NP40 buffer containing protease and phosphatase inhibitors. Protein concentrations were measured, and native gel electrophoresis was performed. Here 10-60 µg of protein extracts were loaded onto 5.5 % native gel and resolved at 4 °C. The gels were immunoblotted following a transfer in 0.1% SDS-containing transfer buffer for 1 h. The antibodies used were: HSP90β (SMC-107; RRID:AB_854214; 1:2,000) and HSP110 (SPC-195; RRID:AB_2119373; 1:1,000) from Stressmarq; HSC70 (SPA-815; RRID:AB_10617277; 1:500), HOP (SRA-1500; RRID:AB_10618972; 1:1,000) from Enzo; HSP90α (ab2928; RRID:AB_303423; 1:6,000) and HSP70 (ab94368; RRID:AB_10716913; 1:5,000) from Abcam; CDC37 (4793; RRID:AB_10695539; 1:1,000) and HOP (5670; RRID:AB_10828378; 1:500), from Cell Signaling Technology.
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6

Antibodies and Inhibitors for Protein Analysis

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Polyclonal antibodies to KIT (western), MAPK, GAPDH and HSP90 were purchased from Dako (Carpinteria, CA), Life Technologies (Carlsbad, CA), Proteintech Group Inc. (Rosemont, IL) and Santa Cruz Biotechnology (Santa Cruz, CA), respectively. All phospho-antibodies, polyclonal antibodies to AKT and the monoclonal antibody to S6 were purchased from Cell Signaling Technology (Beverly, MA). Monoclonal mouse antibodies to KIT (co-IP) and CK2 (Santa Cruz Biotechnology, CA), CDC37 (Abcam Biotechnology, Cambridge, MA) and β-actin (Sigma-Aldrich, St. Louis, MO) were used. Anti-mouse normal IgG was purchased from Cell Signaling Biotechnology. CX4945 (CX) and imatinib (IM) were purchased from Selleck (Houston, TX) and LC Laboratories (Woburn, MA, USA), respectively. Lentiviral CK2 shRNA constructs were purchased from The RNAi Consortium (TRC, Cambridge, MA, USA). Crystal violet and propidium iodide solution were purchased from Sigma-Aldrich. Protein A, Protein G beads, Lipofectamine and Plus reagent were purchased from Invitrogen (LIFE Technologies, USA). Puromycin and polybrene were purchased from Sigma (St. Louis, MO, USA).
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