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Jem 1400 electron microscope

Manufactured by Ametek
Sourced in United States

The JEM-1400 is a transmission electron microscope (TEM) designed for high-resolution imaging and analysis of a wide range of samples. It features an accelerating voltage of up to 120 kV and provides a maximum magnification of up to 1,200,000x. The JEM-1400 is capable of performing various imaging and analytical techniques, including bright-field imaging, dark-field imaging, and selected area electron diffraction (SAED).

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6 protocols using jem 1400 electron microscope

1

Microfluidic Protein Aggregation Analysis

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Aggregated proteins from the microfluidic device were obtained by excising the PDMS block from the glass slides using a sterile scalpel and flushing the surfaces repeatedly with 100 μl of ultrafiltered deionized water. The collected liquid was refrigerated along with the remaining liquid in the reservoirs until further analysis. Procedures for collecting aggregated proteins from shaking experiments as well as for EM sample preparation were described previously7 (link). Negative stain EM data were collected on a JEOL JEM1400 electron microscope with a Gatan Orius 832 CCD. Cryo-EM data were collected on a JEOL JEM-2100F microscope with K2 Summit direct detector. Data were processed using EMAN259 (link) and RELION-445 (link) software packages.
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2

Extracellular Vesicle Isolation and Characterization

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EVs were purified from coACCM and AF using the ExoQuick TC-ULTRA kit (System Bio, Palo Alto, CA, USA) or AF EVs were purified by ultracentrifugation with a Beckman XL-80 Ultracentrifuge (Beckman Coulter, Brea, CA, USA) and a SW41TI rotor by 107,000× g spin for 90 min at 4 °C. The resulting supernatant was collected as the EV-depleted fraction, and the pellet was washed twice with cold PBS, then resuspended in cold PBS and immediately stored at −80 °C or on ice then further analyzed. Qualitative and quantitative analysis of EVs was performed using nanoparticle tracking analysis (NTA) with the ZetaView particle analyzer model PMX-120 (Particle Metrix, Inning am Ammersee, Germany), transmission electron microscopy (see below), the Bradford method as described previously [72 (link)] (BioRad, Hercules, CA, USA), Western blotting (see below), and LC-MS/MS (see below).
For TEM either total AF, purified EVs from AF, or EV-depleted AF were applied to electron microscopic 200 mesh copper grids and negatively stained with 2% aqueous uranyl acetate. They were examined and measured in a JEOL JEM-1400 electron microscope at 80 kV. Images were acquired on bottom-mounted CCD camera Orius SC200 (Gatan, Pleasanton, CA, USA), and were used to measure the size, relative numbers, and shape of EVs.
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3

Histological and Ultrastructural Analysis of Ocular Tissues

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Tissues were fixed in 4% paraformaldehyde and then paraffin. Sections were cut into 5 μm sections using a microtome. Tissues were stained with hematoxylin and eosin (H&E) and examined using light microscopy. Fresh corneal and conjunctival samples were fixed in 2.5% glutaraldehyde solution in phosphate buffer at pH 7.4 for 4 h and postfixed for 1 h in 1% osmium tetroxide solution in 0.1 M phosphate buffer solution. After further postfixation, dehydration, embedding, slicing, and staining procedures, sections were examined in JEOL JEM-1400 electron microscope and photographed by CCD camera (Gatan Inc., Pleasanton, CA, USA).
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4

Negative Staining of Protein Samples

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Carbon-coated copper grids were prepared by the application of a thin layer of formvar with an overlay of carbon. Protein samples (10 μl) were applied drop wise. The grid was thin dried with filter paper before washing with 2 x 10 μl of deionised water, blotting with filter paper between steps. Negative staining was achieved by the addition of 10 μl of 2% (w/v) uranyl acetate, which was subsequently blotted with filter paper. A second addition of 10 μl of 2% (w/v) uranyl acetate was allowed to stain for 30 seconds before blotting on filter paper. Micrographs were recorded on a JOEL JEM-1400 electron microscope equipped with a Gatan Orius camera.
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5

Protein Extraction and Cryo-EM Analysis

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Aggregated proteins from the microfluidic device were obtained by excising the PDMS block from the glass slides using a sterile scalpel and flushing the surfaces repeatedly with 100 μl of ultrafiltered deionized water. The collected liquid was refrigerated along with the remaining liquid in the reservoirs until further analysis. Procedures for collecting aggregated proteins from shaking experiments as well as for EM sample preparation were described previously (7 ). Negative stain EM data were collected on a JEOL JEM1400 electron microscope with a Gatan Orius 832 CCD. Cryo-EM data were collected on a JEOL JEM-2100F microscope with K2 Summit direct detector. Data were processed using EMAN2 (61 (link)) and RELION-4 (46 ) software packages.
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6

Ultrastructural Analysis of Organoids

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Organoids were fixed overnight using 2.5% (w/v) glutaraldehyde dissolved in 0.1 M sodium cacodylate. Tissue fragments were then fixed for 1 h using 2% OsO4 buffered in Palade's buffer [0.23 % (w/v) CH3COONa, 0.58% (w/v) C8H11N2NaO3 dissolved in MilliQ (pH 7.3)]. Tissue was dehydrated through an increasing series of alcohol and embedded in Epon 812 (Sigma-Aldrich). Using a Leica Ultracut, 90 nm ultra-thin sections were cut, mounted on copper grids and contrasted at RT with uranyl acetate and lead citrate. Sections were assessed using a Jeol JEM 1400 electron microscope at 60 kV. For image collection, a digital camera was used (Gatan).
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