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9 protocols using thioflavine t

1

Protein Characterization and Antioxidant Assays

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WPI (protein content > 91.5%) was acquired from Hilmar Industries (Hilmar, CA, USA). Thioflavine T (ThT), 8-anilino-1-naphthalenesulfonic acid (ANS), Congo red, 1,1-diphenyl-2-picrylhydrazyl (DPPH) and 2,2′-azino-bis-3-ethylbenzthiazoline-6-sulfonic acid (ABTS) were purchased from Sigma (St. Louis, MO, USA). All other chemicals and reagents were higher than analytical grade.
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2

Chitosan-PEG Nanoparticles for Amyloid-beta Inhibition

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Chitosan (CS, average Mw 5000), acryloyl chloride (TCI, Shanghai, China), Methoxy poly(ethylene glycol) (CH3O-PEGn-CH2CH2COOH) (Mn = 368) was purchased from Jiaxing Biomatrix and Biotechnology Inc. Thioflavine-T, Cy3.5 and Cy5 were obtained from Sigma-Aldrich. 1,1,1,3,3,3-Hexafluoro-2-propanol (HFIP) and dimethyl sulfoxide (DMSO) were purchased from Aldrich Chemical Co. and used without further purification. Aβ, FITC-Aβ, Beclin-1 (B) (>95%) and scrambled Beclin-1 peptide (B’) (>95%) were customized from GL Biochem Ltd. (Shanghai, China). Aβ42 was pre-treated with HFIP, followed by evaporation with N2 and stored at −20 °C. Cell counting kit-8 assay (CCK-8) (Beyotime Institute of Biotechnology, China) were used without further purification. Other solvents and reagents were used as received.
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3

Amyloid Peptide Aggregation Inhibition

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Human amidated IAPP (1–37) and human Aβ (1–40) were purchased from AnaSpec (Fremont, California, United States). Human amidated IAPP (1–37) and human Aβ (1–40) purities were >96% as reported by the manufacturer AnaSpec. 1,1,1,3,3,3-Hexafluoro-2-propanol (HFIP), dimethyl sulfoxide, sodium phosphate monobasic, thioflavine-T, thiazolyl blue tetrazolium bromide, ammonium molybdate tetrahydrate, caffeic acid, curcumin, (−)-epigallocatechin gallate, silibinin (A and B diastereomers), rosmarinic acid, and myricetin were all purchased from Sigma-Aldrich (Saint Louis, MO, United States).
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4

Quantifying Amyloid Plaque Size in Brain

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Amyloid plaques size was quantified using Thioflavine T staining. Brain section was stained with 100 µg/mL Thioflavine T (Sigma T3516) for 15 min, rinsed with ethanol 70% for 5 min once and with PBS three times. Brain sections were mounted and images were acquired using a Zeiss AxioImager Z1 microscope. Plaque size was quantified using the threshold function in ImageJ. Then, frequency was calculated using the frequency function in Excel. For each animal, 5 brains sections were analyzed.
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5

Lysozyme-based Nanocomposite Synthesis

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Hen egg-white lysozyme (14,400 Da), HWL-N, Thioflavine T, ThT, chloroform, and methanol were purchased from Sigma (Milano, Italy). Ethylene Glycol (EG, ≥99%) was obtained from Scharlab (Milano, Italy). Sodium sulfide nonahydrate, PVP (Mw 55000), silver nitrate, GO solution (4 mg/mL) were obtained by Sigma Aldrich (Milano, Italy). All aqueous solutions were prepared using ultrapure Milli-Q water obtained from a Milli-Q set-up (Millipore pH = 5.6 at 20 °C). Suprasil quartz slides were purchased from Hellma (Muellheim, Germany), 5-MHz AT-cut gold-coated QCM sensors were provided by Biolin (Espoo, Finland).
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6

Biochemical Assays for Neurodegenerative Enzymes

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Butyrylcholinesterase from equine serum (BuChE), butyrylthiocholine, 5′,5′-dithiobis-2-nitrobenzoic acid (DTNB), human monoamine oxidase A and B, Cu/Zn SOD from bovine erythrocytes, kynuramine, donepezil, clorgylin, selegiline, and thioflavine T were purchased from Sigma-Aldrich (Milano, Italy). Human Aβ1–40 amyloid peptide (cat. Ab120479) was obtained by Abcam (Cambridge, UK). Purified recombinant Mn SOD was obtained in Streptococcus mutans as reported [85 (link)].
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7

Acetylcholinesterase Inhibitor Derivatives

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Acetylcholinesterase from Electrophorus electricus (AChE), butirrylcholinesterase from equine serum (BuChE), acetylthiocholine, butirrylthiocholine, 5′,5′-dithiobis-2-nitrobenzoic acid (DTNB), donepezil, and thioflavine T were purchased from Sigma-Aldrich (Milano, Italy). Human β-amyloid peptide (1–40, cat. ab120479) was obtained from Abcam (Cambridge, UK).
donepezil hybrid derivatives (HT1, HT1a, HT2, HT3, HT3a, HT4, and HT4a) were obtained as previously described [28 (link)].
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8

Fluorescent Dye-Based Assay Protocol

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Thioflavine T and disperse red 13 (95%), were purchased from Sigma-Aldrich. The acetonitril (99.5%) was acquired from VWR Chemicals. The phosphorylated resveratrol (PR, 60–85%) was obtained from Ajinomoto OmniChem as a free sample and was marketed as “resveratrol triphosphate trisodium salt”. The pH was adjusted using HCl (1 N, VWR Chemicals) and NaOH (1 N, Roth). Deionized water (Millipore quality) with a resistivity of 18 MΩ cm was used. The fly food was prepared from formula 4-24 drosophila instant medium by Schlüter Biologie.
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9

Tau Aggregation Kinetics Assay

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Baseline aggregation of 10 µM TauΔK280 (0.46 mg/ml) was induced by adding 0.115 mg/ml heparin (4:1, Tau:heparin, [TauΔK280+hep]AGG) in the presence of 50 μM Thioflavine‐T (ThioT, Sigma‐Aldrich). To determine the seeding potential of condensates, 0.0092 mg/ml Tau or TauΔK280 in form of 24 h‐old condensates (prepared with 25 µM Tau) were added to 10 µM TauΔK280 in PBS, pH 7.4, 1 mM DTT (50:1, TauΔK280:condensates), and 50 µM ThioT was added to detect Tau aggregation. [TauΔK280+hep]AGG plus pre‐aggregated Tau was used as a positive control. TauΔK280 in PBS without heparin and PBS with ThioT alone were used as negative controls. Samples were prepared in triplicates in clear bottom 384‐well µClear plates (Greiner) and ThioT fluorescence (λEx = 440 nm, λEm = 485 nm) was recorded at 37°C in a plate reader (Synergy H1, Biotek) every 15 min after a 5 s shake.
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