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29 protocols using lipofectin transfection reagent

1

Internalization of Fluorescent ASOs in H2K mdx Cells

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H-2Kb-tsA58 mdx myoblasts (H2K mdx cells) were cultured and differentiated as described previously (22 (link)32 (link, link, link, link, link, no link found, no link found, no link found, link, no link found)). For internalization experiment, fluorescein-(FAM)-labeled thiomorpholino ASO (TMO1-FL and PMO-FL, Table 1) was transfected at 100 nM when complexed with lipofectin transfection reagent (Thermo Fisher Scientific) at the ratio of 2:1 (w:w) (lipofectin:ASO) and used in a final transfection volume of 500 μL/well in a 24-well plate as per the manufacturer's instructions, except that the solution was not removed after 3 h. In addition, to assess the ability of TMO to internalize into cells without transfection reagent, TMO1-FL and PMO-FL were incubated with cells at 200 nM for 1, 3, and 5 d. After indicated time points, cell nuclei were stained with Hoechst (Sigma Aldrich) for 10 min and washed five times with PBS containing 10% fetal bovine serum before the images were captured using Olympus TS-100 inverted fluorescence microscopy system with the NIS-Elements software (Nikon Instruments Inc., Hilton, South Australia, Australia). Quantitation of average fluorescence intensity was performed using Image J software.
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2

H2K mdx Myoblast Differentiation Protocol

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H-2Kb-tsA58 mdx myoblasts (H2K mdx cells) were cultured and differentiated as described previously (22 (link)32 (link, link, link, link, link, no link found, no link found, no link found, link, no link found)). Briefly, 60–80% confluent, myoblast cultures were treated with trypsin (Thermo Fisher Scientific, Scoresby, VIC, Australia) and seeded on 24-well plates pretreated with 50 μg/mL poly-D-lysine (Merck Millipore, Bayswater, VIC, Australia), followed by 100 μg/mL Matrigel (Corning, supplied through In Vitro Technologies, Noble Park North, VIC, Australia) at a density of 2.5 × 104 cells/well. Cells were differentiated into myotubes in low-glucose Dulbecco's Modified Eagle Medium (DMEM) (Thermo Fisher Scientific) containing 5% horse serum (Thermo Fisher Scientific) by incubating at 37 °C, 5% CO2 for 24 h.
ASOs were complexed with lipofectin transfection reagent (Thermo Fisher Scientific) at the ratio of 2:1 (w:w) (lipofectin:ASO) and used in a final transfection volume of 500 μL/well in a 24-well plate as per the manufacturer's instructions, except that the solution was not removed after 3 h. For “naked” transfection, the ASOs were mixed directly with Optimem reduced serum medium and added to the cells. For long-term incubations, the cells were collected at 1-, 3-, and 5-d intervals. All experiments were repeated independently at least three times unless specified.
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3

HPV16 Pseudovirion Production and Characterization

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HPV16 PsVs were produced as previously described [23 ]. Briefly, 293TT cells were co-transfected with the p16sheLL expression plasmid [11 (link)] and the reporter plasmid pSVLYFP using the Lipofectin® transfection reagent (Thermo Fisher Scientific). Cells were harvested 72 h post-transfection, lysed in lysis buffer (DPBS-9.5 mM MgCl2 and 0.25% Brij® 58) and incubated at 37 °C for 24 h for maturation. The mature mixture was digested with Benzonase® (Merck KGaA, Darmstadt, Germany) and clarified by centrifugation. Supernatant was placed on an OptiPrep™ gradient (Sigma-Aldrich) for ultracentrifugation at 170,000× g for 20 h. The fraction containing PsVs was recovered and filtered through a Sephadex® G25 column (Cytvia, Marlborough, MA, USA) in DPBS-0.5M NaCl. PsV production was verified by immunoblotting and transmission electron microscopy (TEM). Infectivity was a measure of the number of 293TT fluorescent cells generated by 1 µL of viral stock after 72 h post infection. Each fluorescent cell was considered an infectious unit (InU). PsVs were stored at 4 °C until use.
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4

Myoblast Differentiation and AO Transfection

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H-2Kb-tsA58 (H2K) mdx mouse myoblasts were cultured and differentiated as described previously41 (link),45 (link),46 (link). Briefly, when 60–80% confluent, myoblast cultures were treated with trypsin (ThermoFisher Scientific; cat#: 15400054) and seeded on a 24-well plate at a density of 2 × 104 cells/well. The plates were pre-treated with 50 μg/mL poly-D-lysine (Merck Millipore; cat#: P7886-50mg), followed by 100 μg/mL Matrigel (Corning Life Science; cat#: FAL354234). Myoblasts were differentiated into myotubes in Dulbecco’s Modified Eagle Medium (DMEM) (ThermoFisher Scientific; cat#: 11885084) containing 5% horse serum (ThermoFisher Scientific; cat#: 16050122) by incubating at 37 °C, 5% CO2 for 24 h. AOs were complexed with Lipofectin transfection reagent (ThermoFisher Scientific; cat#: 18292011) at the ratio of 2:1 (v:w) (Lipofectin:AO) and used in a final transfection volume of 500 μL/well in a 24-well plate as per the manufacturer’s instructions.
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5

Differentiation of H2K mdx Myoblasts

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H-2Kb-tsA58 (H2K) mdx myoblasts were cultured and differentiated as described previously.32,33 (link) Briefly, when 60–80% confluent, myoblast cultures were treated with trypsin (Thermo Fisher Scientific, Scoresby, VIC, Australia) and seeded on 24 well plates pre-treated with 50 μg ml−1 poly-d-lysine (Merck Millipore), followed by 100 μg ml−1 Matrigel (Corning, supplied through In Vitro Technologies, Noble Park North, VIC, Australia) at a density of 2.5 × 104 cells per well. Cells were differentiated into myotubes in low glucose Dulbecco's Modified Eagle Medium (DMEM) (Thermo Fisher Scientific) containing 5% horse serum (Thermo Fisher Scientific) by incubating at 37 °C, 5% CO2 for 24 hours. Antisense oligonucleotides were complexed with lipofectin transfection reagent (Thermo Fisher Scientific) at the ratio of 2 : 1 (w/w) (lipofectin : ASO) and used in a final transfection volume of 500 μl per well in a 24-well plate as per the manufacturer's instructions, except that the solution was not removed after 3 hours.
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6

Baculoviral Production of Recombinant BivCaE Proteins

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The production of recombinant BivCaE proteins was performed using a baculovirus expression system [31 (link)]. The BivCaE cDNA, including His-tag sequence, was PCR-amplified using the following primer set: forward (1–18) 5′-ATGGAACTATCAGTTATC-3′ and reverse (1651–1668) 5′-TTACTCCTGCCCACTTAT-3′. The BivCaE cDNA was introduced into the baculovirus vector pBacPAK8 (Clontech, Palo Alto, CA, USA) to construct the pBacPAK8-BivCaE. For generating BivCaE protein-expressing recombinant baculoviruses, pBacPAK8-BivCaE (500 ng) was co-transfected with baculoviral DNA (100 ng) into insect Sf9 cells (1.0–1.5 × 106 cells/well of a 6-well plate) using Lipofectin transfection reagent (Gibco BRL, Gaithersburg, MD, USA). Recombinant BivCaE proteins in insect Sf9 cells were produced by infection of recombinant baculoviruses [30 (link)]. Recombinant BivCaE proteins were purified using the MagneHisTM Protein Purification System (Promega). Concentrations of recombinant BivCaE proteins were analyzed using a Bio-Rad Protein Assay Kit (Bio-Rad, Hercules, CA, USA).
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7

Recombinant Protein Production in Baculovirus System

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Recombinant catalase—GTPX, Tf, and SOD1—were produced using a baculovirus expression system [30 (link)]. The protein-coding sequences of catalase, GTPX, Tf, and SOD1 were PCR-amplified, and a His-tag sequence was included in each cDNA sequence. The cDNA fragments corresponding to the protein sequences were inserted into the pBacPAK8 transfer vector (Clontech, Palo Alto, CA, USA), in which gene expression is under the control of the polyhedrin promoter of Autographa californica nucleopolyhedrovirus (AcNPV). For the expression experiments, 500 ng of the constructs and 100 ng of AcNPV viral DNA [30 (link)] were co-transfected into 1.0–1.5 × 106 Spodoptera frugiperda (Sf9) cells for 5 h by using Lipofectin transfection reagent (Gibco BRL, Gaithersburg, MD, USA). The transfected cells were cultured in TC100 medium (Gibco BRL) with 10% fetal bovine serum (FBS, Gibco BRL) at 27 °C for 5 d. Recombinant baculoviruses were propagated in Sf9 cells cultured in TC100 medium at 27 °C to produce the recombinant proteins, which were then purified using the MagneHis Protein Purification System (Promega, Madison, WI, USA). Protein concentrations were determined using the Bio-Rad Protein Assay Kit (Bio-Rad, Hercules, CA, USA). The recombinant MRJP proteins (MRJPs 1–9) produced in baculovirus-infected insect cells were used as described in our previous studies [27 (link),28 (link)].
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8

Sf21 Cell Transfection with Lipofectin

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Sf21 cells were transfected with the respective expression plasmids at a density of 0.4–0.6x106 cells/mL using Lipofectin Transfection Reagent (Life Technologies). A DNA concentration of 2 μg per 1x106 cells was used at a Lipofectin: DNA ratio of 2:1. DNA and Lipofectin were incubated with the respective culture medium for precomplexing in 2.5% (v/v) of the final volume. After 30–60 min of incubation at RT the transfection mixture was diluted with medium in 37.5% (v/v) of the final volume and added to the cells.
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9

Integrin-targeted gene silencing in mESCs

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Transfection with α6 siRNA, CD151 siRNA and α3 siRNA was performed in 24-well plates using pooled specific mouse integrin α6 siRNA (Dharmacon, Thermo Scientific, Accell SmartPool mouse Itga6, E-040204-00-0005, Accell SmartPool mouse cd151, E-043064-00–0005, Accell SmartPool mouse Itga3, E-042246-00–0005) and a non-targeting control siRNA (Dharmacon, Thermo Scientific, Accell non-targeting Control Pool, D-001910-10-05) (25nM final concentration). The mESCs were transfected in triplicate for 24hr in the presence of serum free media, and then 500µl of complete growth media was added per well for another 24 hr. Then, the transfection mix was replaced with fresh growth media, and protein expression analysis was performed. Transfection with dominant-negative-Akt (HA-Akt DN, [K179M], Addgene plasmid 16243) and with Gst-Er71 (vector pGEX-4T1, provided by Dr. C. Park) was performed using Lipofectin Transfection Reagent (Life Technologies™).
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10

Androgen Signaling Pathway Regulation

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All transfections using the lipofectin transfection reagent (Life Technologies, Grand Island, NY) were done according to the manufacturer's instructions. LNCaP cells were cultured in AD medium for 3 days. For luciferase assay, cells were plated at a density of 2×105 cells in 6 well plates for 24 h. Before transfection, medium was replaced with serum free DMEM/F12 medium. Cells were transfected with 3 μg/well of prostate specific antigen (PSA) or androgen response element (ARE) luciferase reporter (27 (link)), siATF3 (10 nM) and renilla luciferase (30 ng/well) or CMV-ATF3 (3 μg/well). After 3 h incubation with DNA/lipofectin complexes, cells were refed with 2% AD medium. The cells were treated with 10 nM of R1881 (dissolved in ethanol) and 5 μM edelfosine. Control wells received equal amount of vehicle (ethanol and 0.01 M PBS). Cells were harvested 24 h after transfection, lysed, and assessed for luciferase activity using the dual luciferase assay kit (Promega Corp., Madison, WI). Luciferase values were normalized using renilla luciferase expression. The data represent mean ± SD (Standard Deviation) from three independent experiments.
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