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2 protocols using atg5 sirna

1

Autophagy Regulation in Fibroblast Cells

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DHA, colchicine, PDGF-BB, Etoposide, CQ, rapamycin (Rapa), 3-MA, bafilomycin A1, dimethyl sulfoxide (DMSO), anti-rabbit IgG, and anti-mouse IgG were purchased from Sigma-Aldrich (St. Louis, MO, USA). Dulbecco’s modified essential medium (DMEM), Opti MEM medium, phosphate-buffered saline (PBS), trypsin-EDTA and fetal bovine serum (FBS) were bought from GIBCO BRL (Grand Island, NY, USA). Primary antibodies against p53, p16, p21, α-SMA, Hmga1, LC3-I/II, ULK1, p-ULK1, mTOR, p-mTOR, Atg3, Atg5-Atg12, Atg6, Atg7, Atg14, p62, β-galactosidase and β-actin were purchased from Cell Signaling Technology (Danvers, MA, USA). Primary antibody against α1(I) procollagen was purchased from Epitomics (San Francisco, CA, USA). Primary antibodies against Ki67, p62 and GATA6 were purchased from Abcam Technology (Abcam, Cambridge, UK). Atg5 siRNA, GATA6 siRNA, negative control siRNA, Atg5 plasmid, GATA6 plasmid, negative control vectors and mRFP-GFP-LC3 plasmid were purchased from Hanbio (Shanghai, China). MegaTran 1.0 transfection reagent was from OriGene (Rockville, MD, USA).
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2

Oxidative Stress and Autophagy Modulation

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Glutathione (GSH), N-acetyl cysteine (NAC), hydrogen peroxide (H2O2), sodium pyruvate (Na Py), catalase (Cat), superoxide dismutase (SOD), chloroquine (CQ), 3-methyl adenine (3-MA), Bafilomycin A1, dimethyl sulfoxide (DMSO), Mito Peroxy Yellow 1 (MitoPY1), anti-rabbit IgG, and anti-mouse IgG were purchased from Sigma-Aldrich (St Louis, MO, USA). Dulbecco's modified essential medium (DMEM), Opti MEM medium, phosphate buffered saline (PBS), trypsin-EDTA, and fetal bovine serum (FBS) were bought from GIBCO BRL (Grand Island, NY, USA). Oxidation sensitive 2′,7′-dichlorodihydrofluorescin diacetate (DCFH-DA) was purchased from Molecular Probes (Eugene, OR, USA). Primary antibodies against α-SMA, Desmin, GFAP, LC3-I/II, ULK1, p-ULK1, mTOR, p-mTOR, Atg5, Atg7, Atg9, Atg14, P62, PI3 Kinase Class III (PI3KCIII), and β-actin were purchased from Cell Signaling Technology (Danvers, MA, USA). Primary antibody against α1(I) procollagen was purchased from Epitomics (San Francisco, CA). Primary antibodies against Perilipin A, Rab25, and Fibronectin were purchased from Abcam Technology (Abcam, Cambridge, UK). Atg5 siRNA, Rab25 siRNA, negative control siRNA, Atg5 plasmid constructs and negative control vectors were purchased from Hanbio (Shanghai, China). MegaTran 1.0 transfection reagent was from OriGene (Rockville, MD, USA).
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