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2 protocols using kif3b

1

Proteomic Profiling of KIF3A/B-Deficient hPSCs

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KIF3A−/−, KIF3B−/− and isogenic control hPSCs were lysed with RIPA buffer containing protease and phosphatase inhibitors (Roche). Protein concentration was determined using a Pierce BCA protein assay kit. 50 μg of total protein was separated in a 4–20% acrylamide gel (Bio-Rad) and analyzed with silver stain (Bio-Rad) or transferred onto a PDVF membrane using standard procedures. 5 % milk was used as a blocking agent prior to and during immunoblotting. Blots were probed with antibodies raised against PC1 (Santa Cruz sc-130554), PC2 (Santa Cruz sc-25749), KIF3A (Abcam ab11259), KIF3B (Cell Signaling 13817), β-Actin (Cell Signaling 4970), FLOT1 (Cell Signaling 18634), IFT88 (Proteintech 13967–1-AP), ARL13B (Proteintech 17711–1-AP), GLI1 (Cell Signaling 3538), GLI2 (Abcam ab26056), PTCH1 (Cell Signaling 8358), ALIX (Cell Signaling 2171), ANXA5 (Cell Signaling 8555), GM130 (Cell Signaling 12480), HPS70 (Cell Signaling 4876), CD9 (Cell Signaling 13174), ICAM-1 (Cell Signaling 4915), and EpCAM (Cell Signaling 2626).
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2

Hippocampus and Cortex Protein Analysis

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Proteins in the hippocampus and cortex (five mice per group) were lysed using radioimmunoprecipitation assay (RIPA, Beyotime) lysis buffer and phenylmethanesulfonyl fluoride (PMSF, Beyotime) (RIPA:PMSF = 100:1) supplemented with protease inhibitors (Roche). After determination of protein concentration using BCA Protein Assay Kit (Beyotime), equal amounts of protein (50 μg) was separated by SDS-PAGE and electrotransferred onto polyvinylidene fluoride (PVDF) membranes (Millipore, Billerica, MS, USA). Then the PVDF membranes were blocked using 5% nonfat milk for 2 h, incubated with primary antibodies (4 °C) overnight, and incubated with HRP-conjugated secondary anti-rabbit or anti-mouse antibodies (1:5000, Multi Sciences, China) for 1 h at 37 °C. Immunoreactive bands were observed by enhanced chemiluminescent substrate (ECL, Pierce) exposure to X-ray films. At last, the bands were quantified using Image J, and the relative intensity of each band was normalized to the band of β-actin.
Target proteins were detected using the following primary antibodies: Bax (Abcam, 1:1000), Bcl-2 (Abcam, 1:500), LC3 (Sigma-Aldrich, 1:1000), P62 (Cell Signaling Technology, 1:1000), DIC (Millipore, 1:1000), KIF3B (Cell Signaling Technology, 1:1000), and β-actin (Beijing 4A Biotech Co., Ltd, 1:5000).
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