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39 protocols using digidata 1320a

1

Blind Analysis of Electrophysiological Data

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All the recording data were filtered at 1 or 2 kHz and digitized at 10 kHz. Analog to digital conversion was performed using Digidata 1320A or 1440A (Molecular Devices). Data were acquired using Clampex 9.2 or 10 (Molecular Devices), and analyzed using custom macros written in Igor Pro 4.0 (Wavemetrics), Minianalysis 6.0.7 (Synaptosoft), and Clampfit 10 (Axon Instruments). The experimenters were blind to the genotypes of the mice.
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2

Characterizing Neuronal K+ Currents and Spontaneous Activity

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Data was acquired with a MultiClamp 700B amplifier digitized using a Digidata 1320A interface and the Pclamp9.2 software package (all from Molecular Devices, Sunnyvale, CA). The sampling rate for the continuous recordings of spontaneous activity was 50 kHz. The cell capacitance was determined and compensated using the Multiclamp Commander software. K+ currents were measured by step depolarizations to −60 mV to 0 mV in 10 mV increments from a holding potential of −60 mV (Fig 1A inset). The K+ currents were very stable over ∼30 min recordings in control extracellular solution displaying spontaneous changes of less than ±3%. The K+ currents characteristics were determined as previously described [6] . The spontaneous firing activity was measured in cell-attached configuration, voltage-clamp mode Vhold = 0 mV.
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3

EEG and EMG Analysis of Behavioral States

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EEG and EMG signals were amplified with a Grass model 9E polygraph (Grass Technologies) and digitized at a sampling rate of 2 kHz (DIGIDATA 1320A; Molecular Devices). Four epidural electrodes were implanted [1.4 mm anteroposterior (AP), ±1.3 mm mediolateral (ML), and 2.4 mm AP, ML ±2.4 mm ML from bregma], and a reference electrode was implanted in the cerebellar region of the skull. EMG amplitude and video data were analyzed to discriminate each behavioral states. To compare the EEG and EMG fluctuations with the transition between Non-Nd and Nd states, delta power was analyzed through short time fourier transform, and EMG was smoothed to match the power analysis. Delta power and EMG was normalized by the mean value of nodding episode.
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4

Kv1.3 Currents Characterization in CD8+ T Cells

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Kv1.3 currents were recorded from CD8+ T cells in whole-cell voltage clamp configuration using an AxoPatch 200B Amplifier (Molecular devices). Pipettes were formed from Borosilicate glass (TW150F-4, World Precision Instruments) with a P-97 horizontal puller (Sutter Instruments) and had a resistance between 4 and 7 MΩ when filled with intracellular pipette solution containing (in mmol/L) 140 KF, 55 EGTA, 5 CaCl2, 10 MgCl2, and 10 HEPES [pH 7.22; (19 (link))]. The external solution contained (in mmol/L) 145 NaCl, 5 KCl, 1 MgCl2, 2.5 CaCl2, 5.5 glucose, and 10 HEPES (pH 7.4,all reagents from Millipore-Sigma). Kv1.3 currents were elicited by 800-ms step pulse depolarization from -80mV to +50 mV. Data were acquired using pCLAMP 8.0 software (Molecular Devices) through a 16-bit A-D/D-A interface (Digidata1320A, Molecular Devices). Data were low pass filtered frequency at 2 kHz and digitalized at 100 kHz. The amplitude of the peak current was determined at +50 mV. The verity of Kv1.3 currents was confirmed by blocking the channels by ShK-Dap22 (Bachem), a specific Kv1.3 channel blocker (28 (link)).
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5

Electrophysiological Recording of mIPSCs

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mIPSCs were recorded in ACSF that, along with DNQX (10 μM) and D-AP-5 (50 μM), included tetrodotoxin (TTX; 1 μM) to block APs, sIPSCs were recorded without TTX. Whole-cell voltage-clamp recording of mIPSCs was conducted using a high-chloride internal pipette solution, which resulted in an inward chloride current with cells clamped at −76 mV (corrected for liquid junction potential in Clampfit). The pipette solution consisted of the following (in mM): 100 CsCH3O3S, 50 CsCl, 3 KCl, 0.2 BAPTA, 10 HEPES, 1 MgCl2, 2.5 Phosphcreatine-2Na, 2 Mg-ATP, and 0.25 GTP-Tris, titrated to pH 7.2–7.3 with 3 M CsOH (osmolarity 280–290 mOsm). In all experiments, lidocaine N-ethylbromide (QX-314; 5 mM) was added to the pipette solution on the day of the experiment. Synaptic currents were recorded using an Axopatch 700B amplifier (Molecular Devices), filtered at 2 kHz, sampled at 20 kHz, digitized (Digidata 1320 A; Molecular Devices), and stored for off- line analysis (using Minianalysis software written in IGOR Pro; Wavemetrics, Lake Oswego, OR) (Hwang and Copenhagen, 1999). Access resistance stability (10–18 MΩ; 80% compensation) was monitored using a 2 mV voltage step applied every 120 s, and data from cells were discarded when >15% change occurred.
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6

Patch-Clamp Recording of Cultured Cells

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For patch-clamp recording, the recording culture dish was mounted on the stage of an inverted microscope (TMD300; Nikon, Tokyo). The indifferent electrode was an Ag-AgCl wire connected to the culture dish. Membrane voltages and currents were recorded in the whole-cell configuration using a patch-clamp amplifier (Axopatch 200B; Molecular Devices, San Jose, CA, USA) linked to a computer [35 (link),36 (link),37 (link)]. The voltage-clamp and current-clamp procedures were controlled by pCLAMP software (Molecular Devices). The data were low-pass filtered with a cut-off frequency of 5 kHz and then digitized at 10 kHz by an analog-to-digital interface (Digidata 1320A; Molecular Devices). Cultured cells were perfused at 1 mL/min with Ringer solution bubbled with 100% O2. The composition of HEPES-buffered Ringer solution (in mM) was 135 NaCl, 5 KCl, 2 CaCl2, 1 MgCl2, 10 glucose, and 10 HEPES (the pH was adjusted to 7.4 with KOH). The recording pipette was filled with pseudo-intracellular solution with the following composition (in mM): 140 mM KCl, 1 mM CaCl2, 2 mM MgCl2, 5 mM BAPTA, 10 mM HEPES. The solution was adjusted with KOH to pH 7.4. The pipette resistance was 6–8 MΩ. Tetrodotoxin (1 µM TTX, a voltage-gated sodium channel blocker) was applied through the bath.
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7

Patch-Clamp Analysis of Cochlear Glia-Like Cells

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Cultured cochlea tissue infected with lentivirus was used. Recordings were done in HEPES buffer containing (mM): 144 NaCl, 5.8 KCl, 1.3 CaCl2, 2 MgCl2, 10 HEPES, 0.7 NaH2PO4, and 5.6 D-glucose (pH 7.4 was adjusted with NaOH). Glia-like supporting cells located below the inner hair cell layer were whole-cell patch clamped, and current traces were elicited by 1-sec ramps descending from +100 mV to -100 mV with -60 mV holding potential. Recording electrodes (7~11 MΩ) supplemented with (mM): 126 K-Gluconate, 5 HEPES, 0.5 MgCl2, and 10 BAPTA (pH adjusted to 7.3 with KOH) were advanced through tissue under positive pressure. Slice chamber was mounted on the stage of an upright Hamamatsu digital camera viewed with a 60X water immersion objective with infrared differential interference contrast optics using Imaging Workbench Software. Electrical signals were digitized and sampled with Digidata 1320A and Multiclamp 700B amplifier (Molecular Devices) using pCLAMP 10.2 software. Data were sampled at 10 kHz and filtered at 2 kHz. Glass pipettes were pulled from a micropipette puller (P-97, Sutter Instrument), and all experiments were conducted at room temperature 20~22℃.
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8

Single-channel patch-clamp analysis

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Multiple- and single-channel inside-out recordings were performed using an amplifier (Axopatch 200A; Molecular Devices). Patch pipettes were pulled from borosilicate capillaries using a pipette puller (model PP-83; Narishige), which was used uncoated. The resistance of the patch electrodes ranged from 2 to 5 MΩ. Data acquisition was performed using a Digidata 1320A acquisition system (Molecular Devices) at a sampling rate of 1.0 kHz unless specified otherwise. Single-channel analysis was carried out using the QUB package (Qin et al., 1996 (link), 1997 (link)). Dwell-time measurements were performed on data that were idealized according to the segmental-k means method based on a hidden Markov model–type analysis.
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9

Single-Channel BK Current Recording

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BK currents at single-channel resolution were recorded from excised, inside-out (I/O) membrane patches. Both bath and electrode solutions contained (mM) 130 KCl, 5 EGTA, 1.6 HEDTA, 10 HEPES, 5.59 CaCl2 ([Ca2+]free≈30 μM), 2 MgCl2, pH 7.35. For experiments with [Ca2+]free≈3 μM, both bath and electrode solutions contained (mM) 130 KCl, 5 EGTA, 1.6 HEDTA, 10 HEPES, 4.49 CaCl2, 2.44 MgCl2, pH 7.35. Nominal free Ca2+ was calculated with MaxChelator Sliders. Patch-recording glass electrodes were fire-polished on a microforge WPI MF-200 (World Precision Instruments) to give resistances of 5–9 MΩ when filled with electrode solution. An agar bridge with Cl- as the main anion was used as ground electrode. When required by experimental design, excised patches were exposed to a stream of CLR-containing or CLR-free bath solution that was applied onto the patches by using a computerized and pressurized OctaFlow system (ALA Scientific Instruments) via a micropipette tip with an internal diameter of 100 μm. Ionic current was recorded with an EPC8 amplifier (HEKA) at 1 kHz using a low-pass, eight-pole Bessel filter (model 902LPF; Frequency Devices). Data were digitized at 5 kHz using Digidata 1320A and pCLAMP 8.0 (Molecular Devices). For a proper comparison with data previously obtained by us and others, all studies were conducted at room temperature (20–22º C).
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10

Schaffer Collateral Synaptic Plasticity

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Recordings were from either sex, as previously described (17 (link), 53 (link)). Slices were perfused with a flow rate of 2 ml/min at 30°C, with ACSF equilibrated with 95% O2 and 5% CO2 (final pH 7.3). Schaffer collaterals were stimulated every 15 s with a bipolar tungsten electrode, and resulting fEPSPs in CA1 were recorded with a glass electrode filled with ACSF. Signals were amplified with an Axopatch 2B amplifier, digitized with Digidata 1320A, and analyzed with Clampex 9 (Molecular Devices). Stimulus strength was titrated to define maximal response and input-output curves and adjusted to result in ~50% of maximal response. PTT-LTP was induced by a 3-min, 5-Hz tetanus. The average of fEPSP initial slopes from the 5 min preceding the tetanus was set to equal 100% baseline level. The PTT-LTP strength was defined as the average of fEPSP initial slopes obtained between 15 and 45 min after the tetanus. To determine paired-pulse facilitation, fEPSP initial slopes of two consecutive stimuli with the indicated interevent intervals were recorded.
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