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Perfection v550 photo

Manufactured by Epson
Sourced in Japan

The Epson Perfection V550 Photo is a flatbed scanner designed for high-quality photo and document scanning. It features a 6400 dpi optical resolution and can scan images up to 8.5 x 11.7 inches in size.

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7 protocols using perfection v550 photo

1

Assessing Microbial Toxicity in B. adusta

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The multi-species microbial assay (MARA) assay was applied to the post-culture liquids of B. adusta CCBAS 930 after the treatment with the immobilized mycelium (after 3 cycles for 4- and 12-week storage at 4 °C) of B. adusta CCBAS 930 according to the manufacturer’s protocol. The lyophilized microorganisms placed in row H of the microplates were rehydrated and pre-incubated for 4 h at 30 °C. A series of six dilutions of the initial solution of MTX (10 µg/mL) was placed in rows G–B of the microplates. The medium was introduced into row A (strain control). The microorganisms from row H were then added to each sample dilution. The microplate was incubated at 30 °C. After 18 h, the plates were scanned in a flatbed scanner (Epson Perfection V550 Photo). The results were processed using an image analysis program that facilitated calculation of the MTC (microbial toxic concentration) value [% vol.] for each strain.
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2

In vivo NBT assay for O2− production

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Cumulative O2−• production in C. reinhardtii cells was analysed using in vivo NBT staining [55 (link)] with modifications [44 (link)]. Cell suspensions were centrifuged (600× g, 8 min, 10 °C). The pellet was then re-suspended in 2 mL of the growth medium with basal Cu concentration containing 1 mM NBT. Then, 200 µL of each suspension was spotted on Whatman filter paper (Whatman 3MM Chr) in nine replications. The paper was wrapped in transparent food wrap to protect it from water evaporation. The algae were then incubated for 20 min at 21 °C under illumination 35–40 μmol photons m−2 s−1. After incubation, photosynthetic pigments were removed by acetone extraction. The dried papers on which the blue precipitate of formazan could be seen were scanned using Epson Perfection V550 Photo. Semi-quantitative densitometric analysis was performed using Fiji ImageJ software ver. 2.9.0.
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3

Morphometric Analysis of Sardinian Germplasm

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Digital images of archaeological and modern samples were acquired at the Sardinian Germplasm Bank (BG-SAR), using a flatbed scanner (Epson Perfection V550 photo), with a digital resolution of 400 dpi for a scanning area not exceeding 1024 × 1024 pixels [36 (link)]. Each accession was scanned twice, first with a white and then a black background. The images were segmented using the software package ImageJ v. 1.53n (http://rsb.info.nih.gov/ij) (accessed on 11 January 2019), and the plugin Particles8, freely downloadable on the official website (http://www.mecourse.com/landinig/software/software.html), (accessed on 1 January 2019) was used to measure 26 morphometric parameters (Table 6).
Regarding the statistical processing, the analysis was performed using the IBM SPSS (Statistical Package for Social Science) software version 16.0 [74 ], applying the Linear Discriminant Analysis (LDA).
To verify the performance of the LDA a cross-validation procedure was applied considering three statistical variables Tolerance, F-to-enter, and F-to-remove following the procedure described in detail in Sarigu et al. [44 (link)].
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4

Assessing Bisphenol Toxicity with MARA

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The multi-species microbial assay (MARA) was used to toxicity of bisphenol derivatives, respectively. In the MARA assay, lyophilized microorganisms placed in row H of the microplates were rehydrated and pre-incubated for 4 h at 30 °C. Series of six dilutions of the initial solution of each bisphenol derivatives (1, 0.5, 0.125, 0.0625, 0.0312, and 0.0156 mg L−1) were placed in rows G-B of the microplates. Pure medium was introduced into row A as a strain control. Subsequently, microorganisms from row H were added to each sample dilution. Microplates were incubated at 30 °C (18 h) and subsequently scanned in a flatbed scanner (Epson Perfection V550 Photo). The results were processed using an image analysis program that facilitates calculation of the average MTC and minimum MTC (microbial toxic concentration) values (mg L−1). Moreover, based on the growth inhibition results for each strain, the EC50 value (half-maximal effective concentration) was calculated for each bisphenol and classified as: EC50 < 1 mg L−1 — very toxic to aquatic organisms, 1–10 mg L−1 — toxic to aquatic organisms, 10–100 mg L−1 harmful to aquatic organisms, and > 100 mg L−1 — not classified as harmful to aquatic organisms (European Commission (EC) 1993 ).
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5

Multi-Spectral Analysis of Microtiter Plates

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A single-beam spectrophotometer (Jenway 6405 UV/Visible, Staffordshire, UK) with matched quartz cells of 1 cm path length was used to obtain the UV-vis spectra of the solutions. The IR spectra were acquired with a Perkin Elmer Spectrum Two TM attenuated total reflectance-infrared (ATR-IR) spectrometer. A flatbed scanner (PerfectionV550 Photo, Epson Corp., Suwa, Japan) operating in transmittance mode was used to obtain photometric measurements by placing the microtiter plate containing the samples between the imaging surface and the transparency unit of the scanner. In this manner, the sample solution was aligned between the white LED light source with the CCD strip detector establishing an optical path length [14, (link)18] . During scanning all automatic correction functions embedded in the software (Easy Photo Scan, v.1.00.08, Epson Corp.) were disabled to ensure that the photometric data were not manipulated. Images of the microtiter plate were saved as Joint Photographic Experts Group (JPEG) files at a resolution of 300 dpi and the color intensity was determined as the mean gray intensity and the intensity of the color in the RGB color system using Image J [19] .
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6

Reprogramming MEFs to iPSCs

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For reprogramming to iPSCs, we used three different systems: i4F MEFs were cultured in the presence of doxycycline at a concentration of 1 μg/mL, and medium was replaced every 48 h during 14 days; WT MEFs were transduced with lentiviral plasmids Tet-O-FUW-OSKM and FUW-M2rtTA and cultured with doxycycline as above; or WT MEFs were transduced with retroviral plasmids: pMXs-Oct4, pMXs-Sox2, pMXs-Klf4, and pMXs-c-Myc (see Supplemental Experimental Procedures for plasmid details), and cultured in iPSC medium.
After 14 days, cell cultures were fixed with 4% paraformaldehyde and the AP activity was detected with Vector Red Substrate Kit (Vector Labs) or Alkaline Phosphatase Blue Membrane Substrate Solution (Sigma-Aldrich) according to the manufacturer's instructions. Plates were scanned with Epson Perfection V550 Photo (Epson) and quantification of positive colonies was performed using ImageJ software.
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7

Root Morphology Analysis Protocol

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For RSA analysis, roots from 10- or 14-day-old plants were drawn on transparent plastic sheets and root images were scanned at a resolution of 200 dpi using an Epson scan (Epson perfection V550 photo). The images were first opened with the ImageJ software to invert the color. Finally, root images were analyzed using EZ-Rhizo software (Figure 1(a)) [34 (link)]. The root traits analyzed were the main root length (MRL), number of lateral root (NLR), total root size (TRS), lateral root size (LRS), lateral root density of the main root (LRD-MR), basal zone length (Basal); branched zone length (Branched), and apical zone length (Apical) (Figure 1(b)).
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