The largest database of trusted experimental protocols

Thioflavint dye

Manufactured by Merck Group
Sourced in United States

ThioflavinT dye is a fluorescent dye used for the detection and quantification of amyloid fibrils in biological samples. It selectively binds to the cross-beta sheet structure of amyloid fibrils, resulting in a significant increase in fluorescence emission. The dye can be used in various applications, such as the study of protein aggregation and the diagnosis of amyloid-related diseases.

Automatically generated - may contain errors

4 protocols using thioflavint dye

1

Thioflavin T Aggregation Assay Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
For the ThioflavinT aggregation assay, aggregation reaction was prepared as above and combined with 12.5 μM ThioflavinT dye (Sigma-Aldrich). Reactions were transferred to a 3904 Corning plate and read with an Infinite M1000 plate reader (Tecan Systems). Plate reader conditions were 30 °C incubation, 446 nm excitation, 490 nm emission, reading every 15 min. To assess the efficiency of AcTEV cleavage, aggregation reaction was prepared as above, and timepoints were taken by combining the aggregation reaction with 4x Laemmli sample buffer, boiling at 95 °C for 5 min, and storing at −20 °C until all timepoints were collected. Then, timepoints were run on a 12% SDS-PAGE gel and stained with Coomassie for imaging.
+ Open protocol
+ Expand
2

Histopathological Analysis of Alzheimer's Disease

Check if the same lab product or an alternative is used in the 5 most similar protocols
After 2 days fixation in 4% paraformaldehyde (PFA), the half brains were incubated for 48 h in 30% sucrose. Brains were then frozen in 2-propanol (Merck) and subsequently sectioned on a freezing-sliding microtome to collect 25 μm coronal sections. For histological staining, brain sections were stained with Thioflavin T dye according to standard protocol (ThT 1% in 50% Ethanol; Sigma Aldrich, St. Louis, MO). Sections were immunostained to visualize Aβ deposits using mouse monoclonal antibody (6E10, 1:500; COVANCE). Microglial reaction was assessed using a rabbit polyclonal antibody to Iba-1 (1:1000; Wako, 019–19141). Vectastain Elite ABC Kits were used and revelation obtained with Vector SG Blue (Vector Laboratories).
+ Open protocol
+ Expand
3

Solid-Phase Synthesis and Purification of Peptides

Check if the same lab product or an alternative is used in the 5 most similar protocols
The parent peptide, TK9 and its shorter fragments (Scheme 1) were synthesized on a solid phase peptide synthesizer (Aapptec Endeavor 90) using Fmoc protected amino acids and Rink Amide MBHA resin (substitution 0.69 mmol/g; Novabiochem, San Diego, California) by following a solid phase peptide synthesis protocol described elsewhere.17 ,18 (link) All the crude peptides were further purified by reverse phase HPLC (SHIMADZU, Japan) using a Phenomenix C18 column (dimension 250 × 10 mm, pore size 100 Å, 5-μm particle size) by linear gradient elution technique using Water and Methanol as solvent both containing 0.1% TFA as the ion pairing agent. The purity and molecular weight of the eluted peptides were confirmed by MALDI-TOF (Bruker, Germany). 4,4-dimethyl-4-silapentane-1-sulfonic acid (DSS) and deuterium oxide (D2O) were purchased from Cambridge Isotope Laboratories, Inc. (Tewksbury, MA). Thioflavin T dye was purchased from Sigma Aldrich (St. Louis, MO). Throughout the experiment HPLC grade water was used for sample preparation. hIAPP was purchased from Genscript (Piscataway, NJ). hIAPP was prepared by dissolving the peptide in hexafluoroisopropanol (Sigma Aldrich) followed by lyophilization. Peptide stock was dissolved in 100 μM HCl (pH 4), sonicated for 1 min, diluted into the appropriate buffer system and kept on ice until use.
+ Open protocol
+ Expand
4

Amyloid Aggregation Kinetics Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Aggregation reaction was prepared as above and combined with 12.5 μM ThioflavinT dye (Sigma-Aldrich, St. Louis, MO, USA). Reactions were transferred to a 3904 Corning plate and read with an Infinite M1000 plate reader (Tecan Systems, San Jose, CA, USA). Plate reader conditions were 30°C incubation, 446 nm excitation, 490 nm emission, reading every 15 min.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!