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7 protocols using ab252930

1

Chromatin Immunoprecipitation of EZH2 and HMGA1

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The ChIP assays were performed using EZ-ChIP Kit (Millipore, Billerica, MA, USA) according to the manufacturer’s instructions. ChIP grade antibodies for EZH2 (ab191250) and HMGA1(ab252930) were from Abcam. The ChIP primer of the promoter region of DIRAS3 [25 (link)] and ULK1 [28 (link)] can be found in Supplementary Table 3 (Table S3) based on previous studies reported. Quantification of immunoprecipitated DNA was performed using qPCR.
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2

RIP Assay for EZH2 and HMGA1

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The RNA immunoprecipitation (RIP) assay was performed using a Magna RIPTM RNA-Binding Protein Immunoprecipitation Kit (Millipore, Billerica, MA, USA) according to the manufacturer’s instructions. ChIP grade antibodies against EZH2 (ab191250) and HMGA1(ab252930) were from Abcam.
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3

Immunohistochemical Analysis of HMGA1 Expression

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Cores from formalin-fixed, paraffin-embedded tumor tissue blocks from the surgical specimens were used to construct tissue microarrays (TMAs). After construction of the TMAs, they were sectioned with a microtome (Microm HM 335 E) at a thickness of 4 µm, and the expression of HMGA1 was evaluated by immunohistochemistry (IHC) staining using standard protocols described in Mesquita et al. [42 (link)]. Rabbit recombinant monoclonal HMGA1 primary antibody (anti-HMGA1, 1:5000 dilution, Abcam ab252930, Cambridge, UK) was incubated overnight at 4 °C in a humidified chamber. Samples were considered HMGA1-low when they were negative for HMGA1 or it was present in less than 20% of the malignant cells and considered HMGA1-high otherwise, in agreement between two observers.
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4

ChIP Analysis of HMGA1 Binding on Cyclin E Promoter

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MDA-MB-231 cells were treated with vehicle or 1 μM CB for 48 h and then harvested for ChIP assays using a Magna ChIP™ A/G Chromatin Immunoprecipitation Kit (Millipore, Cat #.17-10085). ChIP assays were performed using antibodies against HMGA1 (ab252930, Abcam) and normal IgG antibodies, according to the manufacturer’s protocol. qPCR was performed with primers flanking the cyclin E promoter. Relative fold change of HMGA1 recruitment on cyclin E promoter was determined by calculating the fold enrichment of target antibodies over IgG, followed by normalization of CB-treated samples over the vehicle.
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5

Antibodies and Reagents for mTOR Signaling

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Antibodies against HMGA1 (ab129153), HMGA1-ChIP Grade (ab252930), and FKBP12 (ab2918) were purchased from Abcam. Antibodies against HMGA1 (sc-393213) and FKBP12 (sc-133067) and mouse IgG (sc-2025) were purchased from Santa Cruz Biotechnology. Antibodies against S6 ribosomal protein (#64108) and phospho-S6 ribosomal protein (#81736) and rabbit IgG (#2729), mTOR (#2983), phospho-mTOR (#5536), eIF4EBP1(#9452), and phospho-eIF4EBP1(#9456) were purchased from Cell Signaling Technology (Danvers, MA). Antibody against beta actin (81115-1-RR) was purchased from Protein Tech (Wuhan, China). Rapamycin was obtained from MedChemExpress (HY-10219).
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6

Immunohistochemical Analysis of Breast Tumor Xenografts

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Primary tumors generated from transplanted MDA-MB-231 cells were fixed in 4% paraformaldehyde overnight and embedded in paraffin. Primary tumor sections were dewaxed with xylene and rehydrated with ethanol (100% to 70%). Antigen retrieval was performed by boiling the specimens in Immunosaver (Nissin EM, Tokyo, Japan) diluted 1:200 for 45 min at 98°C. The sections were permeabilized with 0.1% Triton X-100 (Sigma-Aldrich, St Louis, MO, USA) for 15 min. After blocking with Dako blocking reagent (Vector Laboratories, Newark, CA, USA) for 30 min, sections were incubated with primary antibodies for 1 h at room temperature. Sections were then incubated with the primary antibodies, anti-CD44 (60224-1-IG, Proteintech Group, Rosemont, IL, USA; diluted 1:100) and anti-HMGA1 (ab252930, Abcam, Cambridge, UK; diluted 1:200), and secondary anti-mouse Alexa Fluor 488-labeled antibody (A-11001, Thermo Fisher Scientific, Waltham, MA, USA; diluted 1:1000) and anti-rabbit Alexa Fluor 594-labeled antibody (A-212-7, Thermo Fisher Scientific; diluted 1:1000). Slides were mounted with VECTASHIELD mounting medium with Hoechst 33342 (Thermo Fisher Scientific). Stained sections were imaged using an FV10i Laser Scanning Microscope (OLYMPUS, Tokyo, Japan).
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7

Protein Extraction and Western Blot Analysis

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Total protein was extracted from EPCs using RIPA lysis buffer (#P0013B, Beyotime Biotechnology) according to the instructions. Protein was quantified in each group according to BCA protein assay kit. SDS-PAGE loading buffer (#MB2479, Meilunbio) was mixed. The mixture was heated in a boiling water bath at 100°C for 5 minutes. The protein was adsorbed onto PVDF membrane by gel electrophoresis. Primary antibodies against TSG101 (14497-1-AP, 1 : 1000, Proteintech), CD81 (66866-1-Ig, 1 : 1000, Proteintech), CD63 (25682-1-AP, 1 : 1000, Proteintech), ASC (10500-1-AP, 1 : 2000, Proteintech), Caspase-1 (#4199, 1 : 1000, CST), NLRP3 (19771-1-AP, 1 : 1000, Proteintech), IL-18 (10663-1-AP, 1 : 2000, Proteintech), HMGA1 (ab252930, 1 : 1000, Abcam), RRM2 (11661-1-AP, 1 : 2000, Proteintech), TK1 (15691-1-AP, 1 : 1000, Proteintech), TYMS (15047-1-AP, 1 : 1000, Proteintech), and β-actin (66009-1-IG, 1: 1000, Proteintech) were incubated at 4°C overnight. TBST was washed three times at room temperature and incubated with secondary HRP goat anti-mouse IgG (SA00001-1, 1 : 5000, Proteintech) and HRP goat anti-Rabbit IgG (SA00001-2, 1: 6000, Proteintech). ECL chromogenic exposure was performed. Odyssey Infrared Imaging System (Li-COR Biosciences, Lincoln, NE, USA) was applied to detect protein bands, and β-actin was used as an internal reference to detect expression levels.
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