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489 protocols using eclipse e200

1

Mitochondrial Membrane Potential Measurement

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Mitochondrial membrane potential (Δψm) was measured by fluorescent dye Rhodamine 123 and JC1. Following treatment, the Rhodamine 123 dye (10 µg/ml) was added to the cells and incubated in the dark for 1 h at 37 °C, followed by washing of cells with Krebs ringer (KR) buffer. The fluorescence intensity was measured using a fluorimeter at excitation and emission of 508 and 530 nm wavelength, respectively, and fluorescence images were captured by microscope (Nikon Eclipse E200) using a digital camera [35 , 45 (link)]. For JC1 staining, after treatment, the cells were rinsed with PBS and incubated for 30 minutes in dye (1 µM) dissolved in PBS, followed by washing of the cells thrice, and the fluorescence intensity was measured at excitation and emission of 514 and 590 nm wavelengths, respectively, by fluorimeter for estimating JC1 aggregate. While for JC1 monomer the readings were taken at excitation and emission at 514 and 529 nm wavelengths, respectively. Fluorescence images were captured by microscope (Nikon, Eclipse E200).
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2

Hyphal Morphology and Conidial Quantification

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The mycelia of the WT and transformants were inoculated on PDA and incubated for 7 days at 25°C. Hyphae were randomly selected and placed on the surface of glass slides with 5 μl of distilled water, and their morphology was observed under a microscope (Eclipse E‐200; Nikon). Mycelia that had been incubated for 10 days were collected with 5 ml of distilled water in individual Petri dishes. Hyphae of the same age were removed using two layers of gauze and then placed on the surface of a coverslip with 10 μl of distilled water. The number of conidia was counted using a microscope (Eclipse E‐200; Nikon). All experiments were repeated three times and 10 Petri dishes were selected for each observation.
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3

Histological and Immunohistochemical Analysis of Liver and Pancreas

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The livers and pancreases were fixed in 10% (v/v) formaldehyde and routinely processed by washing, dehydration, clearing, paraffin embedding, casting, and sectioning into 5 µm slices. Liver tissue sections were stained with hematoxylin and eosin, and stained areas were viewed using an optical microscope (Eclipse E200; Nikon, Tokyo, Japan) at 400× magnification. Pancreatic tissue sections were stained with an anti-insulin antibody and subjected to immunohistochemistry analysis, and the stained area was visualized using an optical microscope (Eclipse E200; Nikon, Tokyo, Japan) at 100× magnification. Densitometric analysis of insulin-positive cells was performed according to previous studies with some modifications [48 (link),49 (link)]. The optical density of insulin-positive cells in stained sections was measured using Science Lab 2001 Image Gauge 4.0 (Fuji Film, Tokyo, Japan). To control for variations caused by Mayer’s hematoxylin stain, the measured density of the other area in same section was subtracted from the measured density of insulin-stained area for each section.
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4

Sperm Motility and Viability Evaluation

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Sperm motility was assessed either by phase-contrast microscopy (200x-400x magnification, Nikon Eclipse E200, Nikon Instruments Inc., Melville, NY, USA) in accordance with WHO guidelines [24] or by the Sander-Cramer test [25] . While in the former, at least 200 spermatozoa per condition, in duplicates, were counted and results presented as percentage of motile cells, in the latter, a dichotomous response is given: positive if 100% of cells become immotile in 20 seconds or negative, if not. This was the only test performed at 20 seconds of exposure and duplicates were also performed.
Sperm viability, on the other hand, was evaluated by the eosin exclusion test as previously described [24, 26] . At least 200 sperm cells were analysed per condition, in duplicates, by phase-contrast microscopy (400x magnification; Nikon Eclipse E200). Results are presented as percentage of live, unstained, sperm.
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5

Immunocytochemistry and Immunohistochemistry Protocols

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Immunocytochemistry (ICC): The SH-SY5Y cells were seeded on the poly-l-lysine coated coverslips, and treatment was given for 24 h. ICC was performed in control, treated and transfected cells, as reported previously [30 (link)]. The signals were captured through fluorescent (Nikon eclipse E200, Japan) or confocal microscopy (Carl Zeiss, Jena, Germany).
Immunohistochemistry (IHC): After the treatment, rats were sacrificed, and the brain was perfused with 15–20 mL of PBS. Quickly, each brain was isolated and kept in 4% sucrose solution for 3 h, incubated in 10% sucrose solution for another 3 h, and finally, shifted to 30% sucrose solution and kept overnight at 4 °C. The brains were then stored at −20 °C for 2 h, blocks were prepared with cryomatrix (Invitrogen, Waltham, MA, USA), and sections were cut down using a cryostat (Thermo Scientific, Waltham, MA, USA) to the thickness of 10–15 microns. The sections were collected on the poly-l-lysine coated slides immediately and processed for staining. Finally, the sections were mounted using an anti-fade medium containing counter stain DAPI (nuclear stain), and images were captured by fluorescent microscope (Nikon eclipse E200, Japan).
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6

Coproparasitological Analysis of Stool Samples

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After collection, the stool samples were subjected to coproparasitological analysis using two techniques for researching helminth eggs and protozoan oocysts: Willis fluctuation [31 (link)] and spontaneous sedimentation by Hoffman et al. [32 ], adapted according to Hoffmann [33 ].
For flotation, a hypersaturated NaCl solution (NaCl 35%) was added to the stool samples and subsequently filtered through a sieve and gauze to remove debris, subjecting it to spontaneous fluctuation due to the difference in density of eggs and oocysts. Finally, they were observed between the slide and coverslip (with the addition of a drop of Lugol’s solution) using an optical microscope (Nikon Eclipse E200, Nikon, Tokyo, Japan).
The sedimentation test was carried out with the addition of water to the sample, filtered through a sieve and gauze to remove debris, subjected to spontaneous sedimentation in a specific cup, and then observed between the slide and coverslip (with the addition of a drop of Lugol) using optical microscopy (Nikon Eclipse E200). Eggs and oocysts were identified according to the method of Zajac and Conboy [34 ].
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7

Computer-Assisted Sperm Motility Analysis

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Spermatozoa motility was assessed using a computer-assisted sperm assay (CASA) method according to World Health Organization guidelines (46 (link)). After euthanasia, spermatozoa were collected from the cauda epididymis of mice and suspended in Dulbecco’s modified Eagle medium (DMEM)-F-12 medium with 10% FBS and incubated at 37.5°C for 30 min; samples were then placed in a prewarmed counting chamber. The Microptic sperm class analyzer (CASA system) was used in this investigation. It was equipped with a 20-fold objective, a camera adaptor (Eclipse E200; Nikon, Japan), and a camera (acA780-75gc; Basler, Germany), and it was operated by an SCA sperm class analyzer (Microptic S.L.). The classification of sperm motility was as follows: grade A linear velocity, >22 μm s−1; grade B linear velocity, <22 μm s−1; curvilinear velocity, >5 μm s−1; grade C curvilinear velocity, <5 μm s−1; and grade D, immotile spermatozoa. The spermatozoa motility data represented only grade A and grade B since only these two grades are considered to be functional.
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8

Computer-Assisted Sperm Motility Analysis

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Spermatozoa motility was assessed using a computer-assisted sperm assay (CASA) method according to World Health Organization guidelines (46 (link)). After euthanasia, spermatozoa were collected from the cauda epididymis of mice and suspended in Dulbecco’s modified Eagle medium (DMEM)-F-12 medium with 10% FBS and incubated at 37.5°C for 30 min; samples were then placed in a prewarmed counting chamber. The Microptic sperm class analyzer (CASA system) was used in this investigation. It was equipped with a 20-fold objective, a camera adaptor (Eclipse E200; Nikon, Japan), and a camera (acA780-75gc; Basler, Germany), and it was operated by an SCA sperm class analyzer (Microptic S.L.). The classification of sperm motility was as follows: grade A linear velocity, >22 μm s−1; grade B linear velocity, <22 μm s−1; curvilinear velocity, >5 μm s−1; grade C curvilinear velocity, <5 μm s−1; and grade D, immotile spermatozoa. The spermatozoa motility data represented only grade A and grade B since only these two grades are considered to be functional.
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9

Histological Evaluation of Stress-Induced Gastric Inflammation

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The stomach tissues collected from the euthanized mice were excised, weighed, fixed with 10% formalin, and dehydrated with ethanol at room temperature before embedding in paraffin. The embedded tissues were then cut into 4 μm sections and stained with H&E. A digital camera (Eclipse E200; Nikon, Tokyo, Japan) was used to randomly capture photos of the H&E staining per section of the embedded tissues under 200× light microscopy from 10 microscopic fields. The stress-induced inflammatory damages were evaluated by histologic scoring performed by an investigator who was blinded to the group. For statistics, each individual score represented the mean of the three sections. The histologic findings were scored as follows:16 (link)

mucosal edema (score 0–4), (2) hemorrhage (score 0–4), (3) inflammatory cell infiltration (score 0–3), and (4) epithelial cell loss (score 0–3).

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10

Microscopic Cell Enumeration Protocol

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One mL samples of culture were fixed with 1 μL Lugol’s iodine solution. The fixed samples were mixed to homogeneity, placed in a hemacytometer (QiuJing factory, Shanghai, China), and counted under a microscope (Eclipse E200, Nikon, Tokyo, Japan). The counting was performed six times for each sample and cell concentration of each sample was calculated using the average cell number. The margin of error of the cell counts of each sample was <20%.
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