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73 protocols using phosphate buffered saline (pbs)

1

Fluorescent Labeling of Extracellular Vesicles

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Labelling of EVs was performed as previously described (Roberts-Dalton et al., 2017) . Briefly, Alexa Fluor 633 C5-maleimide (200μg/mL; Invitrogen, Carlsbad, California, CA, USA) was added to an aliquot of EVs purified after ultracentrifugation containing 60-100µg of total protein for a final volume of 50μL in 1x PBS (PAN Biotech, Aidenbach, Germany). Samples were incubated for 1h with no agitation in the dark at RT. Non-incorporated and excess of dye was removed by washing the sample in 1x PBS (PAN Biotech, Aidenbach, Germany) and centrifugation during 90min at 20 000xg (4°C) for ectosomes and at 100 000xg for 90min for exosomes (4°C) in a swing rotor (TH-641 Sorvall;
Thermo Fisher Scientific, MA, USA). As a control, 1x PBS (PAN Biotech, Aidenbach, Germany)
without EVs was also incubated with the dye and performed in parallel to confirm dye removal by washing with 1x PBS (PAN Biotech, Aidenbach, Germany) and ultracentrifugation. For microscopy analysis, labelled EVs were gently mixed with mowiol and applied into PLO-coated coverslips and glass slides.
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2

Murine and Human T-Cell Viability

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For testing cell viability murine and human T-cells, a combination of the Zombie green fixable viability kit (Biolegend) and 7-AAD (Biolegend) was applied strictly according to the manufacturer’s instructions. Briefly, cells were washed in PBS (PAN Biotech) and resuspended in 100 µl PBS (PAN Biotech) + Zombie stain (1:500) per 1*10^6 cells, incubated for 30 min at RT in the dark and washed in PBS (PAN Biotech) + 10% FCS (Sigma). Then 7-AAD staining was performed 1:20 in PBS (PAN Biotech), the cells were fixed in 4% PFA (Sigma) and the cell viability was assessed on a BD Canto II flow cytometer.
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Immunofluorescence Staining of Cell Lines

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After treatment, primary and cell lines cultures were first washed with 1x PBS (PAN Biotech, Aidenbach, Germany) and fixed with 4% of paraformaldehyde solution (PFA) for 20min at room temperature (RT). In order to quench PFA autofluorescence, samples were incubated with 50 mM of ammonium chloride (NH4Cl) solution for 30min. In order to label the plasma membrane, cells were incubated during 10 min with wheat germ agglutinin (WGA) Alexa FluorTM 633 conjugate in 1x HBSS at RT (5.0 µg/mL; Invitrogen, CA, USA). Cells were washed with 1x PBS (PAN Biotech, Aidenbach, Germany). Cells were permeabilized with 0.1% Triton X-100 (Sigma-Aldrich, MO, USA) for 10min.
Following permeabilization, cells were blocked with 2% bovine serum albumin (BSA) in 1x PBS (Sigma-Aldrich, MO, USA) for 1h at RT and then incubated with the primary antibodies overnight at 4°C. Afterwards, the cells were washed with 1x PBS (PAN Biotech, Aidenbach, Germany) and then with fluorescence conjugated secondary antibodies for 2h at RT. Finally, nuclei were counter-stained with DAPI (Carl Roth, Karlsruhe, Germany) and mounted with mowiol for microscopy.
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4

Fluorescent Lipid Staining of Skeletal Muscle Cells

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Lipophilic green-fluorescent BODIPY 493/503 (D3922, Thermo Fisher Scientific, Waltham, MA, USA) was used for lipid staining. SkMs were seeded at a density of 1000 cells/cm2 and treated as indicated. After 48 h, the cells were carefully washed in PBS (PAN Biotech, Aidenbach, Germany) and incubated with 2 µM BODIPY (5 mM in DMSO) in serum-free DMEM (PAN: P04-03590) for 30 min at 37 °C. Cells were washed again in PBS (PAN Biotech) before imaging.
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5

Cell Culture Protocols for NHF and SCC13 Cells

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NHF were maintained in Dulbecco's Modified Eagle Medium (DMEM) with 4.5 g/L glucose, stable glutamine, sodium pyruvate and 3.7 g/L NaHCO3 (PAN Biotech), supplemented with 10% foetal bovine serum (FBS, Gibco) and 1% penicillin/streptomycin (PAN Biotech). SCC13 cells were maintained in Keratinocyte Serum Free Medium (SFM) with l-Glutamine (Gibco), supplemented with 2.5 μg epidermal growth factor and 25 mg bovine pituitary extract (Gibco), as well as 1% penicillin/streptomycin. All cells were kept at 37 °C with 5% CO2. To passage at confluency, cells were washed with 1× phosphate-buffered saline solution (1×-PBS, PAN Biotech) and detached with 0.05% trypsin/0.02% EDTA in PBS without Ca and Mg (PAN Biotech).
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6

Murine Cortical Neuron Isolation

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Primary neuronal cultures were prepared from E17 pregnant mice of CD1 background (Janvier Labs, France). Briefly, mice were sacrificed and the brains of embryos were taken out, meninges removed, and the cortex dissected out. The cortexes were washed in 1× PBS (Pan Biotech, Germany). Single-cell suspensions were generated by incubating them with trypsin and DNase before careful disintegration. One hundred and thirty thousand cells per well were plated on poly-D-lysine-coated 24-well plates in Neurobasal medium (Thermo Fisher Scientific, Germany) supplemented with B-27 (Thermo Fisher Scientific, Germany). Primary cortical neurons were used for experiments at DIV10-12.
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7

Nanoparticle Tracking Analysis of EVs

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Particle number and size distribution in ectosomes and exosomes samples were determined by nanoparticle tracking analysis (NTA) using a NanoSight LM10 instrument and a LM14 viewing unit equipped with a 532 nm laser (NanoSight, Salisbury, UK). Total EVs samples were diluted in 1x PBS (PAN Biotech, Aidenbach, Germany) to a final volume of 400mL prior to analysis, according to the manufacturer recommendations. Data was recorded using NTA 2.3 software with a detection threshold of 5, captured with a camera level of 16 at 25°C, in videos of 5 x 60 seconds (s) repeated 4 times and averaged for each biological replicate.
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8

Mesenchymal Stem Cells for Canine OA

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Eligible animals were randomly assigned to two groups through a clinical pilot study conducted independently from clinicians. The dogs in “MSCs group” received in a blinded fashion 10 × 106 MSCs in the operated stifle joint by a single injection in the arthroscopic portal site before closure of the joint, according to Nganvongpanit et al. (35 (link)) and Fajardo et al. (36 (link)). Dogs receiving MSCs were prescribed them from the day after surgery and for 1 month thereafter, with an “A” treatment corresponding to an AINS placebo with no claim for any anti-inflammatory or an OA management in the product datasheet. The dogs in the “NSAIDs group” received the MSC vehicle (phosphate-buffered saline; PAN Biotech, Germany) at the same time of surgery as dogs in the “MSCs group” and were prescribed with a “B” treatment corresponding to NSAIDs (firocoxib, 5 mg/kg, orally, once daily) for 1 month, starting the day after surgery. Both A and B treatments have a similar pharmaceutical presentation and were delivered at discharge by an in-house specialized pharmacist, independently from surgeons.
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9

Cytotoxicity Evaluation of Dox and Cis

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Dox and Cis (Sigma-Aldrich, Co, Ltd, USA) were dissolved in distilled water with a maximum concentration of 40 and 500 μg mL−1, correspondingly.
Dulbecco’s modified eagle medium (DMEM) liquid medium, phosphate buffered saline (PBS), penicillin/streptomycin, l-glutamine, and trypsin were obtained from PAN-Biotech (Aidenbach, Germany). Eagle’s minimum essential medium (EMEM) was purchased from CLS cell lines service (Eppelheim, Germany). Fetal bovine serum (FBS), 3-(4,5-dimethylthiazol-2-yl)-sodium acetate anhydrous and MTT were obtained from Sigma-Aldrich Co. (St-Louis, USA). Acetic acid, methanol, acetonitrile, formic acid and trypan blue were from Carl Roth GmbH + Co. KG (Karlsruhe, Germany).
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10

Mitochondrial Function Assay Protocol

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Rh123, JC-10, DAPI, and CCCP were purchased from Sigma-Aldrich. Phosphate-buffered saline (PBS) was purchased from PAN-Biotech and dimethyl sulfoxide (DMSO) from ThermoFisher Scientific. Rh123 (2.6 µM and 1 mg/ml) and DAPI (10 mg/ml) stock solutions were prepared in ultra-pure water, and CCCP was dissolved in DMSO.
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