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8 protocols using ni charged magbeads

1

Cloning and Purification of MeSAUR1

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The full-length coding sequence of MeSAUR1 was amplified with V2 primer pair (Table 1). The PCR product was ligated into the pCold Pros2 vector (TaKaRa, JPN) at the site of Nde I/Sal I, generating pCold Pros2-MeSAUR1. pCold Pros2-MeSAUR1 was introduced into Escherichia coli strain BL21 (DE3) for protein expression. E. coli cells containing pCold Pros2-MeSAUR1 were cultured in LB medium supplied with 100 mg/L Ampicillin at 37°C. When the OD600 of the culture reaches 0.4–0.8, quickly cool the culture to 15°C in ice water, and then 1.0 mM isopropyl β-D-1-thiogalactopyranoside (IPTG) was added and the cultures were incubated at 15°C, 120 rpm for 24 h. The cells were collected and resuspended in the BugBuster® Protein Extraction Reagent (Novagen, GER) and incubated at 30°C for 1 h. The supernatant was collected and purified with Ni-Charged MagBeads (GenScript, United States). pCold Pros2 was expressed and purified as a control in accordance with the above methods. The purified protein was verified by SDS-PAGE and Western Blotting (Sambrook and Russell, 2001 ). Tag Anti-ProS2 (Takara, JPN) and Goat Anti-Mouse IgG/HRP (Boster, United States) were the primary and secondary antibodies used in Western Blot, respectively.
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2

Purification and Analysis of Tagged Proteins

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Escherichia coli Rosetta (DE3) was used for protein prokaryotic expression. GST‐ and His‐tagged proteins were purified by Glutathione MagBeads and Ni‐Charged MagBeads (GenScript, Nanjing, China), respectively. Purified His‐tagged protein (10 µg) and/or GST‐tagged protein (10 µg) were mixed and incubated with 30 µL Glutathione MagBeads in phosphate‐buffered saline (PBS) for 3 h. MagBeads were separated using a magnetic frame and washed five times with 1 × PBS containing 0.5% NP‐40. The bound proteins were analysed by Western blotting.
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3

Overexpression and Purification of MePHD1 Protein

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To get a large amount of MePHD1 protein, the full-length coding sequence of MePHD1 was amplified with P1 primer pairs and then fused to the Nde I/Sal I sites in the pCold Pros2 vector (TaKaRa, Tokyo, Japan), which generated the pCold Pros2-MePHD1. pCold Pros2-MePHD1 was introduced into Escherichia coli strain BL21 (DE3) competent cells for protein expression. The transformed strains were cultured in LB medium supplied with 100 mg/L Ampicillin, at 37 °C, and 250 rpm until the OD600 of the culture reached 0.4–0.8, and the bacterial cell fluid temperature cooled down to 15 °C. The cultures were incubated at 15 °C and 120 rpm, for 24 h, after adding 1.0 mM isopropyl β-d-1-thiogalactopyranoside. The soluble proteins of the cultured cells were extracted and purified by BugBuster® Protein Extraction Reagent (Novagen, Darmstadt, Germany) and Ni-charged MagBeads (GenScript, Jiangsu, China), respectively. pCold Pros2 was expressed and purified as control. The purified protein was verified by 12% sodium dodecyl sulfate polyacrylamide gel electrophoresis. When performing Western blotting, Tag Anti-ProS2 (TaKaRa, Tokyo, Japan) and Goat Anti-Mouse IgG/HRP (Boster, Wuhan, China) were used as primary and secondary antibodies, respectively.
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4

Purification of Histidine-Tagged Proteins

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Following protein expression, cells were resuspended in Buffer A (20 mM Tris-HCl, 500 mM NaCl, 30 mM Imidazole, pH 8.0) and lysed by sonication. Insoluble material was removed by centrifugation and the soluble lysate was mixed with Ni-charged MagBeads (Genscript, Piscataway, NJ, USA) preequilibrated in Buffer A, washed with Buffer A, and eluted with Buffer B (20 mM Tris-HCl, 500 mM NaCl, 300 mM Imidazole, pH 8.0). Samples were mixed with 4X Bolt LDS Sample Buffer (Invitrogen, Waltham, MA, USA) containing 4% β-mercaptoethanol, heated to 95 °C for 5 min, separated using 8–16% Sure-PAGE Bis-Tris gels (Genscript) with MOPS running buffer, stained by Coomassie, and visualized using an Amersham Imager 680 (GE Healthcare).
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5

PvRXLR111-His Recombinant Protein Purification

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PvRXLR111‐His, maltose binding protein (MBP), and MBP‐VvWRKY40 recombinant fusion proteins were expressed in E. coli BL21 (DE3). The PvRXLR111‐His recombinant protein was purified by Ni‐charged MagBeads (GenScript). The recombinant protein GST‐VvWRKY40 was first incubated with glutathione sepharose 4B beads (GE Healthcare) in lysis buffer without EDTA (50 mM Tris‐HCl, 150 mM NaCl, 0.2% (vol/vol) Triton‐X‐100; pH 7.5) on a rotator at 4 °C for 90 min. The beads were washed three times with lysis buffer and then equal amount of PvRXLR111‐His or GFP‐His was added, respectively. The beads were washed three times with the same buffer after incubation on a rotator at 4 °C for 60 min and boiled in 1.5× SDS loading buffer at 100 °C for 5 min. A western blot was performed using anti‐His antibody (TransGen Biotech Co. Ltd).
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6

Identification of MPML14 Peptide's Native Protein

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To find out which M. leprae native protein the MPML14 peptide mimics, the scFv anti-MPML14 antibody was coupled to Ni-charged MagBeads (GenScript) magnetic nanoparticles according to the protocol described by the manufacturer. Subsequently, the total protein extract of M. leprae (1000 ug/ml) was placed in contact with the nanoparticles coupled to the antibody of interest for 1 h at room temperature. Washes (10x) were performed to remove non-binding proteins. Antibody-bound proteins were eluted with glycine acid (0.2 M pH 2.2). The protein present in the eluate was identified using mass spectrometry.
Spectrometry analyses were performed by reduction and alkylation with DTT and iodoacetamide, enzymatic digestion with trypsin and liquid chromatography in HPLC coupled to Quadrupole-Time of Flight electrospray (LC-ESI-Q-TOF). Equipment calibration was performed to 10 ppm precision and a resolution of 9300 for ion m/z 588,8692.
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7

Recombinant Shrimp CREG Protein Purification

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Shrimp CREG coding sequence was synthesized and cloned into pET-28a by the Beijing Genome Institute (BGI, China). pET-28a-EGFP was from lab stock. Recombinant shrimp CREG and EGFP were sequentially accumulated with Ni-Charged MagBeads (GenScript, Piscataway, CA, USA), washed with PBS containing 1% Triton X-114 for five times, eluted by PBS containing 200 mM imidazole, and dialyzed in PBS to remove the imidazole (14 (link)). The recombinant protein endotoxins were assessed before injection with the ToxinSensor™ Chromogenic LAL Endotoxin Assay Kit (GenScript, USA).
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8

Purification and Interaction of Recombinant Proteins

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The Rosetta E. coli was transformed with indicated plasmid and cultured in 2 3 YT medium. Then Rosetta E. coli was induced with IPTG (1:1000) for 3 h. The Rosetta E. coli lysates were incubated with Ni-Charged Magbeads (GenScript, L00295) or Glutathione MagBeads (GenScript, L00327) and purified according to the manufacturer's instructions. Equal amounts of His-tagged purified protein were incubated with GST fusion proteins together with glutathione agarose beads in a binding buffer (50 mM Tris-HCl at pH 7.5, 1% Triton X-100, 150 mM NaCl, 1 mM DTT, 0.5 mM EDTA, 100 mM PMSF, 100 mM leupeptin, 1 mM aprotinin, 100 mM sodium orthovanadate, 100 mM sodium pyrophosphate, 1 mM sodium fluoride). The glutathione agarose beads were then washed three times with binding buffer and then subjected to immunoblotting analysis (Li et al., 2021; Xu et al., 2020) .
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