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8 protocols using gc 2010 plus instrument

1

Fatty Acid Profiling in Plant Seeds

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Seeds from each developmental stage were weighted and dried overnight at 60 °C, then were grounded, extracted with 1 mL of hexane for 1 h, centrifuged at 13,000 rpm for 10 min, and the upper suspensions were transferred to new tubes. This process was repeated for three times. To determine the profiles of fatty acids, extracted lipids were trans-methylated in 0.8 mL petroleum ether and 0.5 mL 5% H2SO4 (v/v, H2SO4: methanol) and the resulting fatty acids were analyzed using GC-MS method (GC-2010, plus instrument, Shimadzu, Japan) with a flame ionization detector on a DB-23 column (60 mm × 0.32 mm ID× 0.25 μm df, Agilent Technologies, Waldbronn, Germany) with the following parameters: column oven temperature 170 °C and flame ionization detector set as 280 °C. Fatty acid content was expressed as percentage of total fatty acids.
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2

Oxysterol Quantification by GC-MS

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The oxysterol concentration was measured according to previous reports14 (link),37 (link). Briefly, lipids were extracted using chloroform/methanol (2:1, v/v) containing butylated hydroxytoluene. After overnight saponification, unsaponified lipids were extracted with hexane. The extracted lipids were applied to a Sep-Pak Silica Vac cartridge (Nihon Waters) to separate oxysterols from chol. After evaporating the oxysterol-containing solvent fraction under N2, dried residues were converted into trimethylsilyl ethers. Oxysterol was quantified by gas chromatography–mass spectrometry using a Shimadzu GC-2010 Plus instrument (Shimadzu Corporation, Kyoto, Japan) coupled with an Inert Cap 5MS/NP capillary column (30 m × 0.25 mm i.d., 0.25 μm thick, GL Sciences Inc, Tokyo, Japan.) connected to a QP2020 series mass-selective detector (Shimadzu). The concentrations of individual oxysterols were measured using 19-hydroxycholesterol (Steraloids, Inc. Newport, RI, USA) as the internal standard. The oxysterols analyzed in this study are listed in Table S4.
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3

GC-MS Analysis of Essential Oils

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A Shimadzu GC-2010 Plus instrument coupled to a Shimadzu QP2010 Ultra mass spectrometer (Shim-pol, Warsaw, Poland) was used for GC-MS analyses. The chromatograph was equipped with a fused-silica capillary column ZB-5 MS (30 m, 0.25 mm i.d.) with a film thickness of 0.25 mm (Phenomenex, Torrance, CA, USA). The oven temperature program was started at 50 °C, held for 3 min, then increased at the rate of 8–250 °C/min, and held for a further 2 min. The MS was operated in EI mode; the scan range was 40–500 amu, the ionization energy was 70 eV, and the scan rate was 0.20 s per scan. The injector (250 °C), interface (250 °C), and ion source (220 °C) temperatures were set. Split injection was performed with a split ratio of 1:20. Helium was the carrier gas at a 1.0 mL/min flow rate. Each of the 9 EOs samples were prepared by diluting 2 µL of EO in 1 mL of hexane. An internal standard was added to each sample. Three parallel measurements were done. The relative percentages of each component present in the EOs were calculated. The retention indices were determined in relation to a homologous series of n-alkanes (C8–C24) under the same operating conditions. The compounds were identified with computer-assisted spectral libraries (MassFinder 2.1 Hamburg, Germany; NIST 2011, Gaithersburg, MD, USA).
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4

GC-MS Analysis of Organic Compounds

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Chromatographic analysis was performed with a Shimadzu GC-2010 Plus instrument coupled to a Shimadzu QP2010 Ultra mass spectrometer. Compounds were separated on a ZB-5 MS fused-silica capillary column (30 m, 0.25 mm i.d.) with a film thickness of 0.25 mm (Phenomenex). The following oven temperature program was initiated at 50 °C, held for 3 min, then increased at the rate of 8–250 °C/min, and held for 2 min. The spectrometer was operated in EI mode; the scan range was 40–500 amu, the ionization energy was 70 eV, and the scan rate was 0.20 s per scan. The injector, interface, and ion source were kept at 250, 250, and 220 °C, respectively. Split injection was conducted with a split ratio of 1:20 and helium was used as the carrier gas at a 1.0 mL/min flow rate. The retention indices were determined in relation to a homologous series of n-alkanes (C8–C24) under the same operating conditions. Compounds were identified using a computer-supported spectral library (MassFinder, NIST 2011), mass spectra of reference compounds, as well as MS data from the literature [40 ,41 ]. Compound identities were confirmed by comparison of retention indices with reference compounds and published data [41 ].
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5

Quantification of Immune Markers and SCFAs

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Total IgE (BioLegend, San Diego, CA, United States), HDM-specific IgE (Chondrex, Redmond, WA, United States), cytokines (IL-4, IL-5, IL-13, IL-17A, and IL-6; BD Pharmingen, San Diego, CA, United States), and eotaxin (R&D Systems, Minneapolis, MN, United States) were analyzed using enzyme-linked immunosorbent assay (ELISA) kits according to the manufacturer’s instructions. SCFA levels in the cecal supernatants were analyzed using mass spectrometry (EZmass Co., Ltd., Gyeongnam, Korea). Briefly, 50 mg of cecal content were mixed with 500 μL of distilled water and 10 μL of 5 M HCl, sonicated for 10 min, and then added 400 μL of ether. The mixture was centrifuged, and 200 μL of supernatants were derivatized by adding 20 μL N,O-bis(trimethylsilyl)-trifluoroacetamide (BSTFA; Machery-Nagel, Düren, Germany). One microliter of the sample was injected into a GC-2010 Plus instrument equipped with a triple quadrupole mass spectrometer TQ-8030 (Shimadzu, Kyoto, Japan).
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6

Fatty Acid Profiling of Plant Tissues

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The fatty acid content of seeds and leaves were analyzed by gas chromatographic analysis with a known amount of 15:0 fatty acid as an internal standard. Samples were transmethylated at 90 °C for 90 min in 0.3 mL of toluene and 1 mL of 5 % H2SO4 (v/v methanol). After transmethylation, 1,5 mL of 0.9 % NaCl solution was added, and the fatty acid methyl esters (FAMEs) were transferred to a new tube for three sequential extraction with 1.5 mL of n-hexane. FAMEs were analyzed by gas chromatography using a GC-2010 plus instrument (Shimadzu, Japan) with 1 30 m × 0.25 um (inner diameter) HP-FFAP column (Agilent, USA), during which the oven temperature was increased from 170 to 180 °C at 1 °C/min.
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7

Fatty Acid Profiling by GC-FID

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Isolation and determination of FAs were performed according to previously described [64 (link)]. In brief, seed FAs were methylated in the 2.5% (v/v) H2SO4 solution diluted with methanol at 80 °C for 2 h. After cooling to room temperature, the solution was added with 2 mL of 0.9% (w/v) NaCl and 2 mL of hexane in due order, and the organic phase was analyzed by gas chromatography using GC-2010 plus instrument (Shimadzu, Kyoto, Japan) with a flame ionization detector and a 30 m (length) × 0.25 mm (internal diameter) × 0.5 μm (liquid membrane thickness) column (Supelco wax-10, Supelco, Shanghai, China). Methyl heptadecanoate was used as an internal standard. The initial column temperature was maintained at 160 °C for 1 min, increased by 4 °C min−1 to 240 °C, and held for 16 min at the final temperature. The peak for each FA composition was identified by their unique retention time, and their concentrations were calculated against the internal control.
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8

Gas Chromatography Measurements Procedure

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For GC measurements, a GC-2010 Plus instrument from Shimadzu with a polar column (Rxi-642Sil MS, length: 30 m, diameter: 0.25 mm, film thickness: 0.25 μm) and a flame-ionization detector (FID) was used. The sample (1 μL) was injected and vaporized at 250 °C. The column was heated from 50 to 280 °C at a rate of 10 K min−1.
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