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15 protocols using elite kit

1

Histochemical Analysis of Arthritic Joints

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Tissue sections (7 μm) from formalin-fixed, paraffin-embedded ankle joints of IL-1Ra–/– mice and BALB/c control mice were digested with proteinase-free chondroitinase ABC (0.25 units/ml in 0.1 M Tris-HCl, pH 8.0; Sigma-Aldrich) for antigen retrieval. Tissue sections were incubated overnight with rabbit anti-S100A8 and anti-S100A9 [23 (link)] or with rabbit anti-VDIPEN for staining of MMP-mediated cartilage destruction. Sections were then incubated with biotinylated horseradish peroxidase-conjugated goat anti-rabbit IgG (Dako) as a second antibody followed by incubation with avidin-streptavidin-peroxidase (Elite-kit, Vector). Peroxidase activity was assessed by staining with 3,3′-diaminobenzidine (DAB; Powervision DAB, Immunologic, Duiven, the Netherlands) in the presence of H2O2 and all sections were counterstained with hematoxylin for S100A8 and S100A9 staining and with orange G (2 %) for VDIPEN staining.
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2

Immunohistochemical Analysis of Tyrosine Hydroxylase

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The 25-µm coronal brain sections were rinsed twice in PBS, incubated in 0.2% Triton X-100 for 30 min at RT and rinsed three times with 0.5% bovine serum albumin (BSA) in 1× PBS for blocking. The brain sections were then incubated overnight at 4 °C with primary antibody: mouse anti-tyrosine hydroxylase (TH, 1:2000 dilution for brain tissue, Pel-freez, Rogers, AR, USA), rinsed three times in 0.5% BSA in 1× PBS and incubated with the appropriate biotinylated secondary antibody and avidinebiotin complex (Elite Kit; Vector Laboratories, Burlingame, CA, USA) for 1 h at RT. Bound antibodies were visualized by incubating with 0.05% diaminobenzidine-HCl and 0.003% hydrogen peroxide in 0.1M PB. Immunostained cells were analysed by bright-field microscopy [34 (link)].
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3

Immunohistochemical Analysis of Human Skin

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Blocks of paraffin-embedded human skin specimens were obtained from the Northwestern University Dermatopathology Tissue Repository. Informed consent was obtained for tissue use from deidentified patients seen at Northwestern University under approval of the Northwestern University Institutional Review Board and in accordance with the Declaration of Helsinki principles.
After deparaffinization and rehydration, tissue sections were treated with antigen retrieval buffer (S1699, DAKO) in a steamer for 20 minutes. Antibodies used: p63 (4A4, Biocare; 1:1000), PFKFB3 (Genetex 1:1000), Keratin 10 (Biolegend; 1:1000), Loricrin (Biolegend; 1:8000). Primary antibodies were applied on tissue sections for 1 hour incubation at room temperature in a humidity chamber. Following TBS wash, tissue sections were incubated with biotinylated anti-rabbit IgG (1:200, BA-1000, Vector laboratories) for 30 minutes at room temperature. The antigen-antibody binding was detected by Elite kit (PK-6100, Vector Laboratories) and DAB (DAKO, K3468) system. Tissue sections were briefly immersed in hematoxylin for counterstaining and were covered with cover glasses.
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4

Immunohistochemical Staining of Calbindin

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The sections were washed six times in PBS to remove any residual cryoprotectant (10 min each). This was followed by an endogenous peroxidase activity block in 0.3% hydrogen peroxide solution (0.3% H2O2, 10% methanol, distilled water), after which the sections were washed three times in PBS (10 min each). To minimize non-specific binding, sections were incubated in 3% horse serum in PBST (PBS plus Triton X-100 at 500 μL/1L PBS) for 1 h and then incubated for 48 h with a primary anti-calbindin antibody (D-28 K, CB300, Swant, Switzerland) in 1% horse serum in PBST. Following this incubation period, sections were washed three times in PBST (10 min each) and incubated with a secondary antibody (in 1% horse serum in PBST) raised against the primary antibody molecule for 2 h (BA-2000, Vector Laboratories). This was followed by three PBST washes (10 min each) and incubation in an avidin–biotin-kit solution (Elite Kit, Vector Laboratories) for 1 h. Following four more washes (10 min each), the label was developed with the DAB kit according to the manufacturer’s instructions (DAB Substrate Kit, Vector Laboratories). All incubations took place at room temperature and, except for the final incubation, on a shaker. The sections were then mounted on gelatin-coated glass slides, air-dried and cover-slipped.
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5

Immunohistochemical Analysis of Apoptosis Markers

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For immunohistochemistry, rats from each group (microinfused with anti-TNF-α antibody, microinfused with PBS or sham-operated rats) were anesthetized by an intraperitoneal injection of 5% chloral hydrate (0.75 mL/100 g) 48 h after SAH. Rats were then perfused transcardially with 0.9% saline followed by 4% paraformaldehyde. Brains were removed and post-fixed in 4% paraformaldehyde overnight, and then equilibrated in 30% sucrose/PBS at 4°C for at least 3 days. Brains were then coronally sectioned at 20 μm thickness with a cryotome. Sections were washed with PBS three times and then blocked in 10% normal goat serum/PBS/0.3% Triton X-100 for 2 h at room temperature. Next, the sections were incubated overnight at 4°C with polyclonal anti-caspase-3 (1:100; Bioworld Technology, Louis Park, MN, USA), anti-bax (1:50, Bioworld Technology) or anti-bcl-2 (1:50, Bioworld Technology). After washing three times in PBS, the sections were then incubated with biotinylated goat anti-rabbit antibody (Elite Kit; Vector Laboratories, Burlingame, CA, USA) for 2 h at room temperature. Staining was detected with a biotin–streptavidin amplification system. Fluorescence images were acquired using a Nikon 80i microscope configured with a charge-coupled device camera interfaced to a personal computer.
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6

Histological Analysis of ob/ob Wound Healing

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The 8mm unsplinted ob/ob model was used to investigate wound histology at day 17. Mice were sacrificed and the wounded tissue was excised, fixed in 10% buffered formalin, and embedded on-edge in paraffin. Immunostaining was performed on 5 μm-thick sections by standard techniques. Primary antibodies against murine CD3 (1:100 dilution, ab5690), B220 (1:500, Cat#14-0452-81, clone: RA3-6B2, eBioscience) and F4/80 (1:200, MCA497GA, AbD Serotec) were used with biotinylated secondary antibody( anti-rat IgG, BA-4001 or anti-rabbit IgG, BA-1000 from Vector laboratories accordingly). The antigen-antibody binding was detected by Elite kit (PK-6100, Vector Laboratories) and DAB sytem (DAKO, K3468). Cells were counted at 20x magnification. Due to the abundance of F4/80+ cells, rather than counting them directly, Image-J software was used to calculate the percentage of positively stained area. CD3+ and B220+ cells were quantified by average counts per field. Granulation tissue thickness was measured at two points on each slide at the edge of the wound.
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7

Immunohistochemical Fluorescence Labeling

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To minimize background fluorescence and fading, GFP(+) GIN and G42 cells were stained using anti-GFP immunochemistry (1°: rabbit anti-GFP, #A11122 Life Technologies, 1:10,000 dilution, 24 h, 20°C; 2°: donkey anti-rabbit Biotin-SP Affinipure #711-065-0152, Jackson Immunoresearch Laboratories, 1:100 dilution, 1 h, 20°C) followed by avidin-biotin-peroxidase reaction (Elite Kit, Vector Laboratories) using 3,3′-diaminobenzidine (DAB). PV expressing cells were immunostained using rabbit anti-parvalbumin (1°: PV27, Swant, 1:1000, 48 h, 4°C; 2°: donkey anti-rabbit Alexa-fluor-488, #A21206 Life Technologies, 1:500, 3 h, 20°C). SST expressing cells were immunostained using rabbit anti-somatostatin (1°: Ab20067 Immunostar, 1:500, 48 h, 4°C; 2°: donkey anti-rabbit Alexa-fluor-488, #A21206 Life Technologies, 1:500, 3 h, 20°C). Prior to staining, tissue was blocked in 10% normal donkey serum (1 h). Specificity controls for the secondary antibodies were performed by excluding the 1° antibody in a small number of sections (n = 4). Only faint neuropil fluorescence was visible and no cell bodies were stained.
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8

In Vitro Retina Preparation and Intracellular Injection

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The in vitro retina preparation and intracellular injection procedure have been described previously (Dacey and Lee, 1994). Eyes were removed from deeply anesthetized animals, and the retina, choroid, and RPE was dissected free of the vitreous and sclera in oxygenated Ames' medium (Sigma‐Aldrich). The retina‐RPE‐choroid was placed flat, vitreal surface upward, in a superfusion chamber mounted on the stage of a light microscope. Autofluorescent granules were visualized with a blue filter block (Nikon B‐2E/C filter, catalog No. 96107; excitation 490 nm; barrier 515 nm). Targeted cells were intracellularly filled with 2–3% Neurobiotin (Vector) and 1–2% pyranine (Molecular Probes) in 1.0 M potassium acetate using high‐impedance (300–450 MΩ) glass micropipettes. After an experiment, retinas were dissected free of the RPE and choroid, fixed for 2 hours in 4% paraformaldehyde, and rinsed overnight in phosphate buffer (0.1 M, pH 7.4).. Retinas were incubated in 0.1% Triton X‐100 (pH 7.4) containing the avidin‐biotin‐HRP complex (Elite kit; Vector) for 8 hours, rinsed in phosphate buffer overnight, and processed for HRP histochemistry with DAB as the chromogen as described above.
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9

Immunohistochemical Analysis of Brain Tissue

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Animals were perfused transcardially with ice-cold saline and brains were removed and immersed into 4% PFA in PBS. After dehydration in 30% sucrose in PBS, coronal sections (30 μm in thickness, one in tenth series) were prepared with a sliding microtome (Leica). For immunofluorescence staining, free floating sections were incubated with the following primary antibodies: goat anti-DCX (sc-8066, Santa Cruz; 1:100), rabbit anti-Ki67 (s2532, Sigma; 1:500), rabbit anti-Iba1 (019-19741, Wako; 1:1,000), rabbit anti-NeuN (MABN140, Millipore; 1:1,000), rabbit anti-MAP2 (4542, Cell Signaling; 1:500), rabbit anti-AQP4 (AQP-004, Alomone labs; 1:1,000) followed by incubation with appropriate secondary antibodies conjugated with 488 (Vector Laboratories, 1:500) or Cy3 or 594 (Jackson, 1:500). For immunohistochemical staining, brain sections were incubated with 3% H2O2 in methanol, to quench endogenous peroxidase activity followed by incubation with primary antibodies: mouse anti-GFAP (G3893, Sigma; 1:2,000) and rabbit anti-vimentin (ab92547, abcam; 1:1,000). After washing, sections were incubated with biotinylated goat anti-mouse or rabbit (1:200, Vector Laboratories). Binding of the antibodies was detected with the Elite kit (Vector Laboratories) with diaminobenzidine (Sigma) and H2O2 for development. All immunostaining analyses were done blindly.
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10

Immunohistochemistry of Brain Vasculature

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Coronal brain sections and cocultured bEnd.3 cells were rinsed twice in PBS, incubated in 0.2 % Triton X-100 for 30 minutes at room temperature, and rinsed three times with 0.5 % bovine serum albumin (BSA) in 1× PBS for blocking. After blocking, they were incubated overnight at 4 °C with primary antibody (anti-TH, anti-P-gp, anti-MPO, or anti-EBA), rinsed three times in 1× PBS containing 0.5 % BSA (10 minutes/rinse), and incubated with the appropriate biotinylated secondary antibody and avidin–biotin complex (Elite Kit; Vector Laboratories, Burlingame, CA, USA) for 1 hour at room temperature. Bound antibodies were visualized by incubating with 0.05 % diaminobenzidine–HCl (DAB) and 0.003 % hydrogen peroxide in 1× PBS. Brain sections were rinsed with 1× PBS for DAB inhibition. Immunostained cells were analyzed by bright-field microscopy.
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