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2 protocols using mabc1152

1

Protein Extraction and Western Blot Analysis

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Protein was collected using RIPA Lysis and Extraction buffer
(ThermoScientific) with PhosSTOP phosphatase inhibitor (Roche) and cOmplete
ULTRA mini protease inhibitor (Roche). 20μg of protein was separated
on a 4–12% Bis-Tris protein gel (Novex), transferred using
the iBlot2 Gel Transfer device (ThermoScientific) onto a nitrocellulose
membrane (Novex) gel, blocked with Rockland Blocking Buffer (Rockland) and
incubated overnight at 4°C with primary antibodies anti-TREX1
(Abcam, ab185228, 1:1000), anti-IRF3 (Cell Signaling,
4302S, 1:1000), anti-phospho-IRF3 (Cell Signaling,
4947S, 1:1000), anti-LINE-1ORF1p (Millipore,
MABC1152, 1:1000), and anti- β-Actin (Abcam,
ab8226, 1:7000), diluted in 3% BSA. The
following day, the cells were incubated with the secondary antibodies for
two hours at room temperature and imaged and quantified using the Odyssey
CLx imaging system (Licor).
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2

Protein Extraction and Immunoblotting for Chromatin Modifications

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Cells were pelleted by centrifugation at 228g for 5 min at 4 °C and resuspended in RIPA buffer (150 mM sodium chloride, 1.0% NP-40, or Triton X-100, 0.5% sodium deoxycholate, 0.1% SDS (sodium dodecyl sulfate) and 50 mM Tris, pH 8.0) and protease inhibitors with benzonase (Novagen; final concentration, 1.25 U µl–1) and incubated for 30 min on ice with intermittent mixing. Extracts were sonicated for 5 cycles with Bioruptor (Diagenode) with the 30 s on and 30 s off cycles, and were cleared by centrifugation at 15,500g for 10 min at 4 °C. Equal amounts of protein extract were denatured in 1× Bolt LDS sample buffer (Thermo Fisher Scientific, B0007) and separated on Bolt Bis-Tris gels (Thermo Fisher Scientific, NW04120BOX, NW00122BOX), blotted on a polyvinylidene fluoride (PVDF) membrane (BioRad, 1704156) and immunoblotted with antibodies to MSL3 (Merck Millipore, ABE467, 1:1,000 dilution), L1 ORF1 (Merck Millipore, MABC1152, 1:1,000 dilution), H4K16ac (Abcam, ab109463, 1:5,000 dilution), H3K27ac (Abcam, ab4729, 1:5,000 dilution), ɑ-tubulin (Sigma, T9026, 1:5,000 dilution), and HERV (Novus Biologicals, NB100-93579, 1:500 dilution), and horseradish peroxidase (HRP)-conjugated goat anti-rabbit IgG H&L (Abcam, ab6721) and HRP-conjugated goat anti-mouse H&L (Thermo Fisher Scientific, 31430) secondary antibodies.
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