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7 protocols using collagen gel

1

3D Collagen Gel Culture of Cells

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A 100 μl of collagen gel (Nitta Gelatin, Osaka, Japan) was layered on the bottom of 48-well for 30 min to allow the collagen gel to solidify. In total 3000 cells in 150 μl of collagen gel (n = 3/group) were then layered on top of the solidified collagen gel. When all the collagen gel was solidified, 1 ml of DMEM containing 10% FBS was added.
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2

Lenvatinib Effects on HUVEC Tube Formation

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In vitro sandwich tube formation (sTF) assay, HUVECs in SFM containing EGF (10 ng/mL) with VEGF (20 ng/mL) or FGF2 (20 ng/ml) were plated onto the 1st layer of collagen gel (Nitta Gelatin, Tokyo, Japan) at 1.0 × 105 cells in 24-well plates and a 2nd layer of collagen gel was added onto the HUVECs. An aliquot of lenvatinib in SFM containing EGF with VEGF- or FGF2 was added at the indicated dose. After 4 days, MTT solution was added and photomicrographs of tube formation were taken with a light microscope. The tube length of capillaries was measured using image analysis (Angiogenesis Image Analyzer, ver. 1.04; Kurabo, Osaka, Japan).
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3

Osteoclastogenesis Signaling Pathway Assay

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Minimum essential medium-α modification (α-MEM) and fetal bovine serum (FBS) were purchased from Sigma (St. Louis, MO). Collagen gel was obtained from Nitta Gelatin Co. (Osaka, Japan). Bacterial collagenase and dispase were purchased from Calbiochem (San Diego, CA). Antibodies against phospho-Cbl Tyr737, phospho-AKT Thr308, AKT, phospho-ERK, phospho-IKKα/β, phospho-GSKα/β, GSK3β, phospho-AKT substrates and GAPDH were purchased from Cell Signaling Technology (Danvers, MA). Anti-ERK1/2 and anti-p85 antibodies were obtained from Upstate Biotechnology, Inc. (Lake Placid, NY). Anti-Cbl, anti-Cbl-b and IKKα antibodies were purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA). Rhodamine, DAPI and Dead End Fluorometric TUNEL were obtained from Promega (Madison, WI). RANK ligand (RANKL) and MCSF were purchased from R&D Systems (Minneapolis, MN). 1,25-Dihydroxyvitamin D3, prostaglandin E2 and tartrate-resistant acid phosphatase (TRAP) staining kit were obtained from Sigma. FPT III was purchased from Calbiochem and LY294002 from Sigma. Ras activity was determined using a commercial kit purchased from Thermo Scientific (Rockford, IL).
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4

Integrin and Rac1 Regulation in Cell-ECM Interactions

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Antibodies used include anti-β1 integrin (ab52971, Abcam), anti-Rac1 (ab33186, Abcam), anti-E-cad (ab1416, Abcam), and anti-MUC-1 (ab109185, Abcam). Other reagents included β1 integrin inhibitor AIIB2 (Developmental Studies Hybridoma Bank, United States), type I collagenase (Solarbio, China), collagen gel (Nitta Gelatin, Japan), culture media (Gibco), and Lipofectamine 2000 and TRIzol (Invitrogen). siRNAs were synthesized by GenePharma, China, and the sequences were as follows: siRNA-β1 integrin: forward, 5′-GUU UAA UGU CUG GUG CUU TT-3′; reverse, 5′-AAG CAC CAG ACA UUA AAC TT-3′; siRNA-Rac1: forward, 5′-UAA AGA CAC GAU CGA GAA AUU-3′; reverse, 5′-UUU CUC GAU CGU GUC UUU AUU-3′; and siRNA-ctrl: forward, 5′-UUC UCC GAA CGU GUC ACG UTT-3′; reverse, 5′-ACGUGACACGUUCGGAGAATT-3′.
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5

In Vivo Evaluation of Hard Tissue Formation by PDLSCs

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To examine the hard tissue formation capacity in vivo, PDLSCs expanded using SFM or FCM were subcutaneously transplanted under the dorsal skin of 6-week-old female nude mice (BALB/C-nu/nu; Nihon Clea, Tokyo, Japan). The cell/scaffold construct consisted of a mixture of approximately 1  ×  106 cells and 400 µL collagen gel (Nitta Gelatin, Osaka, Japan) with 40 mg hydroxyapatite (HA)/β-TCP-scaffold (Ceraform®; NGK Spark Plug, Aichi, Japan). All transplants were collected for histological analysis at 16 weeks post-transplantation (n = 6 per group).
Histological and immunohistochemical examinations were performed as previously described [21 (link)]. Primary antibodies were used as follows: mouse monoclonal anti-human-specific vimentin (1:10,000; Merck KGaA), rabbit polyclonal anti-osteopontin (OPN; 1:1000; Abcam, Cambridge, MA, USA), and rabbit polyclonal anti-cementum attachment protein (CAP; 1:100; LifeSpan Biosciences, Seattle, WA, USA). For negative controls, the primary antibody was omitted during immunostaining.
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6

Quantifying Osteoclast-Mediated Bone Resorption

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In vitro bone resorbing activity was assayed as described previously [12 (link), 16 (link)]. Briefly, osteoclasts were generated in Collagen gel (Nitta Gelatin Co., Osaka, Japan). After 6 days of culture, mature osteoclasts were released from Collagen gel by gentle digestion with 0.1% Collagenase (Calbiochem, San Diego, CA), and cells were seeded onto sterile bovine bone discs in 96-well plates. 48 hours later, bone discs were immersed in 1 M Ammonium hydroxide (Sigma-Aldrich) for 5 min, sonicated for 10 s, and then stained for 4 min with 1% toluidine blue in 1% sodium borate (both from Sigma-Aldrich) and briefly rinsed in water. Pit area was quantified with the measuring tool in Adobe Photoshop CS3 Extended Edition, and was normalized to the number of osteoclasts actually present in each sample, determined by counting osteoclasts that were plated on tissue culture plastic.
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7

Hydrogel-based 2D and 3D Culture of Human Dental Pulp Stem Cells

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According to the manufacturers’ instructions, we fabricated hydrogels of the collagen gel (3 mg·mL−1, Nitta Gelatin, Japan), matrigel (8 mg·mL−1, Corning, NY, USA), and GelMA (5% and 10% of mass/volume, EFL, Suzhou, China). For 2D culture, confocal dishes were precoated with 100 µL collagen gel and matrigel solution followed by 30 min incubation at 37 °C, while precoated 100 µL GelMA solution followed by 40 s light-curing for gel transition. Then 3 × 104 h-DPSCs were seeded on the surface of gels and images were captured using an optical microscope on day 1 and day 3. After phalloidine immunostaining, the cytoskeleton of h-DPSCs was observed by a confocal microscope on day 3. For 3D culture, 1 × 106 h-DPSCs were resuspended into 1 mL gel solution. Cell viability was detected using a Live/Dead staining kit (KeyGEN BioTECH) on days 1, 3, and 6. Live cells with green fluorescence and dead cells with red fluorescence were identified by a confocal microscope and quantified by ImageJ. Moreover, five fields of every single image were randomly selected (the cell number of each field was about 6) to analyze the cell spreading from day 1 to day 6 by calculating the aspect ratio (the ratio between the short axis and the long axis) of h-DPSCs.
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