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9 protocols using talin

1

Quantifying Cytoskeletal Proteins in Collagen Gels

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Cells within collagen I gels were washed with ice-cold PBS and then homogenized with truncated pipette tips (3 times for 20 min each on ice) in modified RIPA buffer (50 mM Tris-HCl, 150 mM NaCl, 1% NP-40, and 0.25% sodium deoxycholate) with a protease inhibitor cocktail (GenDepot, Barker, TX), as explained in a previous study [26 (link)]. The primary antibodies used were as follows: α-tubulin, α-SMA, talin, and vimentin (Sigma-Aldrich); pY416c-Src, ERK1/2, phospho-ERK1/2, FLAG, pS473Akt, pS425talin, caspase 3, and Akt (Cell Signaling Technology, Danvers, MA); paxillin, N-cadherin, and FAK (BD Biosciences); pY397FAK, p67LR, laminin, and Twist1 (Abcam, Cambridge, UK); c-Src, pY118paxillin, pY577FAK, pY861FAK, pY925FAK, Snail1, E-cadherin, β-catenin, and Slug (Santa Cruz Biotechnology, Dallas, TX); ZO1 (Zymed Laboratories, Camarillo, CA); vinculin, integrin α6, β1, and β4 (Millipore, Billerica, MA); fibronectin (DAKO, Carpinteria, CA); and KRS (Atlas Antibodies, Stockholm, Sweden).
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2

Focal Adhesion Protein Analysis

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Antibodies used include: mouse monoclonal antibody (mAb) vinculin (MAB674; Millipore), mouse mAb talin (8d4; Sigma), rat mAbβ1-integrin (AIIBII), rabbit mAb paxillin (Y113; Abcam), rabbit mAb FAK pY397 (141-9; Invitrogen), rabbit polyclonal antibody (pAb) α5-integrin (AB1928; Millipore), mouse mAb MUC1 (HMPV; BD Pharminigen), hamster mAb MUC1 (CT2; Thermo Scientific), rabbit mAb Src Family pY416 (D49G4; Cell Signaling), mouse mAb FAK (77; BD Transduction Laboratories), rabbit pAb paxillin pY118 (2541; Cell Signaling), rabbit mAb pan-AKT (C67E7; Cell Signaling), rabbit pAb AKT pS473 (9271; Cell Signaling); rabbit mAb ERK1/2 pT202/pT204 (197G2; Cell Signaling); rabbit pAb ERK1/2 (9102; Cell Signaling); rabbit mAb Gapdh (14C10; Cell Signaling); Alexa 488 and Alexa 568 conjugated goat anti-mouse and anti-rabbit mAbs (Invitrogen); FITC conjugated anti-hamster mAbs; Cy5-conjugated goat anti-mouse and rabbit mAbs (Jackson); and HRP conjugated anti-rabbit and anti-mouse mAbs. Chemical inhibitors used in these studies include ROCK inhibitor Y-27632 (Cayman Chemical), myosin-II inhibitor (−)-blebbistatin (Cayman Chemical), FAK inhibitor FAK inhibitor 14 (Tocris), MEK inhibitor U0126 (Cell Signaling), PI(3)K inhibitor Wortmannin (Cell Signaling), Src inhibitor Src I1 (Sigma), and DiI (Molecular Probes).
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3

Microscopic Analysis of Cell Adhesion

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Antibodies for talin (Sigma-Aldrich), vinculin (Sigma-Aldrich), liprin-α1 (Proteintech), cortactin (clone 4F11, Millipore), phalloidin AlexaFluor-594 and AlexaFluor-488 (Life Technologies), activated β1-integrin (12G10, Abcam), total β1-integrin (BD Transduction Laboratories), paxillin (BD Transduction Laboratories), pFAK (BD Transduction Laboratories), vimentin (Sigma-Aldrich), N-cadherin (Abcam), b-actin (Santa Cruz), MT1-MMP (Millipore), Rab11 (BD Transduction Laboratories), EEA1 (BD Transduction Laboratories), PKCε (BD Transduction Laboratories) and E-cadherin (BD Transduction Laboratories) were used in immunofluorescence and western blotting. Phalloidin-TRITC and collagen type I from rat tail (Sigma-Aldrich) were used in invasion assays. Secondary antibodies goat anti-mouse AlexaFluor-488 and goat anti-rabbit Alexa Fluor-594 (Life Technologies) were used in 1:400 dilution in immunofluorescence. For immunoblotting, secondary antibodies HRP-Goat Anti-Mouse IgG (H + L) and HRP-Goat Anti-Rabbit IgG (H + L) (Life Technologies) were used in 1:10000–20000 dilution.
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4

Immunofluorescence Characterization of Cell-Matrix Adhesions

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Cultures were fixed with 4% paraformaldehyde (2D: 20 minutes, room temperature; 3D: overnight, 4°C) and staining was performed as described (1 (link)). Primary antibodies against vinculin (hVIN-1, Sigma Aldrich; 700062, Invitrogen; V284, Santa Cruz Biotechnology), β1 integrin (AIIB2, isolated from rat hybridoma), β4 integrin (3E1, Millipore MAB1964), p397FAK (44625G,Invitrogen), p473Akt (Cell Signaling 9271S), Akt(pan)-Alexa488 (Cell Signaling C67E7), E-cadherin (610181; BD Transduction),β-catenin (610153, BD), pan-laminin (L9393, Sigma), laminin 5 (P3H9, isolated from mouse hybridoma), α6 integrin (GoH3, eBiosciences), phospho-myosin light chain kinase 2 - Thr18/Ser19 (3674, Cell Signaling), talin (T3287, Sigma), zyxin (BD, 610521), and AlexaFluor phalloidin (633-conjugate, Invitrogen) were used. Secondary antibodies used include AlexaFluor goat anti-mouse, anti-rabbit, and anti-rat (488, 568 and 633 conjugates).
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5

Immunofluorescence Analysis of Epithelial Markers

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Cells plated in 4-well chamber slides coated with Fibronectin (5 µg/ml, BD Biosciences) were exposed to DZ-50 treatment (5 µM) for 12 hrs. Cells were then fixed in 100% (v/v) methanol, and after blocking at 4°C (5% NGS, 0.3% Triton X), were exposed to the primary antibody (4°C, overnight). The following specific antibodies were used: ILK-1 (Cell Signaling Technology), ZO-1 (Invitrogen), Claudin-11 (Santa Cruz Biotechnology), Snail (Cell Signaling Technology), Talin (Millipore). Cells were then incubated with fluorochrome-conjugated secondary antibody (Invitrogen) (2 hrs, room temperature) and subjected to confocal microscopy using an Olympus FV1000 Confocal Microscope v1.21. and software version FV10-ASW 3.1.
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6

Characterization of Prostate Cancer Models

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PC3-mm2 and C4-2B4, human PCa cells, were maintained in RPMI 1640. HEK-293T cells were maintained in DMEM. All cell lines were verified by polymorphic Short Tandem Repeat loci (STR) profiling and tested negative for mycoplasma infection. The patient-derived xenograft (PDX), MDA-PCa-118b (PCa-118b), was derived from a bone lesion of a patient with castrate-resistant PCa (6 (link)). Cabozantinib (XL184) was provided by Exelixis, San Francisco, CA. Antibodies were from commercial sources: pTalin-S425 (ECM), Talin (Millipore), pFAK-Y397 (Invitrogen), FAK (Cell Signaling), EpCAM (R&D), AE1/AE3 (Dako), penta His (Qiagen), mouse osteocalcin and SPARC (Santa Cruz).
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7

Immunofluorescence Staining of Paraffin-Embedded Tumor Samples

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Paraffin-embedded tumor samples were sectioned (4 μm) prior to antigen retrieval using citrate buffer and trypsin as described previously [31 (link)]. Following antigen retrieval, 3% normal goat serum diluted in phosphate-buffered saline was used for blocking for 30 min. Primary antibodies including Flii (1:200, Santa Cruz Biotechnology, Sydney, Australia), Flap-1/LRRFIP1 (1:400, Bioss, Woburn, USA), PCNA (1:200, Santa Cruz Biotechnology, Sydney, Australia), K1 (1:200, Abcam, Sydney, Australia), K14 (1:100, Abcam, Sydney, Australia), β-catenin (1:200, Santa Cruz Biotechnology, Sydney, Australia), SOX9 (1:1000, Abcam, Sydney, Australia), BrdU (1:500, Sigma-Aldrich, Sydney, Australia), pH3(s28) (1:400, Abcam, Sydney, Australia), γ-tubulin (1:500, Abcam, Sydney, Australia), Talin (1:500, Millipore, Sydney, Australia) were diluted in blocking buffer and applied. Species-specific Alexa Fluor 488, 568 or 633-conjugated secondary antibodies (1:400, Invitrogen, Melbourne, Australia) were diluted in phosphate-buffered saline and applied for detection. For detection of actin, directly conjugated Oregon Green 488 Phalloidin (1:400, Thermo Fisher, Melbourne, Australia) antibody was used. Nuclear counterstain 4,6-diamidino-2-phenyindole (DAPI) (1:5000) was applied last.
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8

Protein Expression Analysis in Cells

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The total protein samples were extracted according to the kit instructions (Whole Protein Extraction Kit, Beyotime, China). The protein was separated by SDS-PAGE (voltage of 80/120 V) and transferred to PVDF membranes at a voltage of 60 V for 3 h. The membranes were blocked with 5% nonfat dry milk for 1 h at room temperature, incubated with primary antibody: GAPDH (1:8000, Cell Signaling Technology, USA); β-Actin (1:1000, Bioworld, China); OPN (1:1000, Abcam, USA); RUNX2 (1:1000, Abcam, USA); FAK (1:500, Cell Signaling Technology, USA); Talin (1:1000, Millipore, USA); Vinculin (1:800, Sigma-Aldrich, USA); Paxillin (1:1000, Becton Dickinson and Company, USA); Zyxin (1:700, Affinity, USA); YAP (1:700, Cell Signaling Technology, USA); P-YAP (1:1000, Cell Signaling Technology, USA) overnight at 4 °C with gentle shaking, and incubated with appropriate secondary antibodies: horseradish peroxidase-labeled goat anti-rabbit IgG (H + L) (1:5000, Fdbio Science, China); horseradish peroxidase-labeled goat anti-rabbit IgG (H + L) (1:5000, Fdbio science, China) at room temperature for 1 h. Protein expression was visualized using an exposure instrument (Tanon 5500, Tanon, China). Quantification of western blot data was performed by Gel-pro software.
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9

Immunofluorescence Staining of Focal Adhesion Proteins

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Cells were washed two or three times with PBS, then xed in 4% paraformaldehyde for 10 min, washed three times with PBS, and permeabilized with 0.1% Triton X-100 for 5 min, and blocked in 2% BSA for 1 h at room temperature. Next, cells were incubated with primary antibodies (FAK, 1:500, Cell Signaling Technology, USA; Talin, 1:500, Millipore, USA; Vinculin, 1:1000, Sigma-Aldrich, USA; Paxillin, 1:500, Becton Dickinson, USA; Zyxin, 1:500, A nity, USA) overnight at 4 °C. The corresponding secondary antibody was then added to samples and incubated at room temperature for 1 h. These antibodies included Cy3 labeled goat anti-rabbit IgG (H + L), Beyotime, China; Alexa Fluor® 546 goat anti-mouse, Life Technologies, USA; or Alexa Fluor™ 488 phalloidin, Thermo Fisher Scienti c, USA. After washing three times with PBS, cells were incubated with DAPI. The images were observed and captured using a uorescence microscope (Carl Zeiss; German). Data analysis was performed using ImageJ 1.52V (NIH, USA).
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