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5 protocols using cy3 tyramide

1

Nerve Injury Evaluation Using Immunostaining

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At 28 days following the operation, the sciatic nerve tissues containing the area of crush injury site (5 mm away from the sciatic notch) were harvested and fixed with 4% paraformaldehyde. Then the longitudinal sections and transverse sections of the nerve tissue were prepared. Moreover, the sections were stained with NF200 (CST, 1:200), S100β (Abcam, 1:200), TuJ1 (Abcam, 1:200), MBP (Abcam, 1:200), CD31 (Abcam, 1:200), CD34 (Abcam, 1:200), VEGFR (Abcam, 1:200), GAPDH (Abcam, 1:200), Akt (Abcam, 1:500), p-AKT (Abcam, 1:500), PI3K (Abcam, 1:500), p-PI3K (ThermoFisher, 1:500) and PTEN (Abcam, 1:500). Secondary antibodies were as follows:Alexa Fluor568–conjugated Goat Anti-Rabbit IgG (Abcam), CoraLite594-conjugated Goat Anti-Mouse IgG (Proteintech, China), CoraLite488-conjugated Goat Anti-Rabbit IgG (Proteintech), CY3-labeled goat anti-rabbit (Servicebio) and AlexaFluor594-labeled goat anti-rabbit IgG (Abcam). Besides, we also used FITC-Tyramide (Servicebio) and CY3-Tyramide (Servicebio) to amplify fluorescence intensity. Nuclei were stained with DAPI, and the sections were observed under confocal laser scanning microscopy. The percentages of the markers positive areas were calculated by dividing integrated option density by selected region area, then multiplied by 100%. All parameters were measured using ImageJ.
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2

Immunofluorescent Staining of Cardiac Myocytes

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Immunofluorescence staining was performed on NRCMs grown on coverslips. NRCMs were fixed with 4 % paraformaldehyde for 15 min and blocked with 3 % BSA in PBS for 30 min at room temperature. For α-actinin staining, NRCMs were incubated at 4 °C for overnight with a rabbit anti-α-actinin antibody (GB111556, Servicebio, Wuhan, China) and a corresponding anti-rabbit Cy3 antibody (GB21302, Servicebio, Wuhan, China) for 1 hour at room temperature. The image was obtained via the fluorescence microscope. The surface area of NRCMs were depicted using Image J. For co-localization of USP38 and TBK1, NRCMs were incubated with rabbit anti-USP38 at 4 °C for overnight, then incubated with corresponding anti-rabbit HRP-labled antibody for 1 hour, followed by Cy3-Tyramide (GB1223, Servicebio, Wuhan, China) for 1 hour at room temperature. Subsequently, NRCMs were incubated with rabbit anti-TBK1 antibody at 4 °C for overnight, then incubated with anti-rabbit Alexa Fluro 488 antibody (GB25303, Servicebio, Wuhan, China) for 1 hour at room temperature. The nucleus was stained with DAPI (GB1012, Servicebio, Wuhan, China) for 10 min. The image was obtained via the confocal scanning microscope (NIKON Eclipse TI, Tokyo, Japan).
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3

Histological Analysis of Lung Tissue

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After fixed in 4% paraformaldehyde for 7 days, lung tissues were embedded in paraffin, cut into slices. After hematoxylin and eosin (H&E) staining, pathological changes were evaluate and scored on a 0–5 severity scale, according to the thickened alveolar walls, cell aggregation, blocked bronchioles and lung consolidation. Infiltration was also evaluated and scored on a 1–4 severity scale.
For immuno-fluorescence assay, the sections were deparaffinized and rehydrated, followed by Citrate-mediated antigen retrieval. After blocking, the primary antibody Anti-Syndecan-1/CD138 Rabbit pAb (cat. no. GB115052, Servicebio), HRP-conjugated goat-anti-rabbit IgG and CY3-Tyramide (cat. no. G1223, Servicebio) were used, followed by Citrate-mediated antigen retrieval. Then another primary antibody Anti-IL-17 Rabbit pAb (cat. no. GB11110-1, Servicebio), secondary antibody HRP-conjugated goat-anti-rabbit IgG and the corresponding iF488-Tyramide (cat. no. G1231, Servicebio) were used. Cell nuclei were stained using 49, 6-diamino-2-phenylindole (DAPI) (cat. no. G1012, Servicebio). The slide scanner Pannoramic MIDI (3DHISTECH) was utilized to image whole slide.
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4

Immunofluorescence Assay for CD8 T-Cells

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For assessment of CD8 T‐cell activity, immunofluorescence was performed on paired pre‐ and post‐treatment tumour samples from 12 patients (six responders and six non‐responders). Briefly, slides were deparaffinized and rehydrated before antigen retrieval. Endogenous peroxidase activity was blocked with 3% H2O2 at room temperature for 15 min. The slides were then incubated with a rabbit recombinant anti‐CD8 alpha antibody [CAL66] (ab237709, 1:1000; Abcam) overnight at 4°C, followed by horseradish peroxidase‐conjugated goat anti‐rabbit IgG at room temperature for 50 min in dark conditions. The slides were subsequently stained with CY3‐Tyramide (red, G1223, Servicebio). The nucleus was counterstained with DAPI (blue, G1012, Servicebio).
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5

Dual-color Immunofluorescence of CD79A and HMGB3 in DLBCL

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Paraffin-embedded DLBCL sections confirmed by pathologists were collected. Paraffin-embedded DLBCL sections were deparaffinized with the dewaxing agent and absolute ethanol. After that, citric acid solution (Servicebio, G1202) was used for antigen retrieval and 3% H2O2 was used to inactivate endogenous peroxidase. Then 3% bovine serum albumin (Servicebio, GC305010) was added to block sections for 30 minutes. Add the primary antibody, anti-CD79A (ZEN BIO, R23860), and incubate overnight at 4 °C. After washing sections three times using PBS, add goat anti-rabbit IgG H&L (HRP) (Servicebio, GB21303) and incubate for 50 minutes. After washing three times using PBS, add CY3-tyramide (Servicebio, G1223) for 10 minutes. Wash with a citric acid solution to remove the first type of primary antibody. Then add the second primary antibody, anti-HMGB3 (Affinity Biosciences, AB_2841269), and incubate overnight at 4 °C. After washing sections three times using PBS, add anti-rabbit IgG (Alexa Fluor 488 conjugate) (Servicebio, GB25303) and incubate for 50 minutes. Finally, sections were stained with DAPI (Servicebio, G1012) and sealed with an anti-fluorescent quenching agent (Servicebio, G1401). Finally, fluorescence image capture was performed using laser scanning confocal microscopy and processed using ImageJ software.
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