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Uct ultramicrotome

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The UCT ultramicrotome is a specialized laboratory instrument designed for the precise sectioning of samples for transmission electron microscopy (TEM) analysis. It provides controlled, reproducible slicing of specimens into extremely thin sections, typically ranging from 30 to 100 nanometers in thickness, enabling detailed ultrastructural examination of the sample.

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4 protocols using uct ultramicrotome

1

Measuring Myelin Thickness in Mouse CC/EC

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TEM was used to measure myelin thickness in the CC/EC area. Mice were perfused with ice-cold saline, followed by 4% PFA and 2.5% glutaraldehyde in 0.1 mol/L PBS buffer. The CC/EC tissue near the site of ischemia was microdissected into 1-mm3 blocks. These specimens were immersion-fixed for 24 h in 2% glutaraldehyde. Tissue was then rinsed in PBS and fixed in 1% osmium tetroxide in 0.1 M PBS for 45 min. Samples were dehydrated in increasing concentrations of acetone and embedded in Araldite resin. Ultrathin 60-nm sections were cut on a Leica UCT ultramicrotome with a diamond knife (Diatome, Wetzlar, Germany), stained with uranyl acetate and lead citrate, and viewed using a JEM1400 TEM (JEOL, Akishima, Japan). Two sections from each animal were analyzed. Three to 5 images (600 μm2 each) were acquired in randomly selected areas within the CC/EC from each section at a magnification of 50,000× and analyzed with Image J by an investigator blinded to experimental groups. At least 50 random axons per animal were analyzed by tracing the axonal circumference and the whole fiber circumference in a blinded fashion. G-ratios were calculated as the ratio of the inner axonal diameter to the total outer diameter (axonal diameter + total myelin sheath thickness).
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2

Quantifying Myelinated Axons in Spinal Cord

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Male mice between 10 and 13 wk of age were perfused with 3% glutaraldehyde and 2% PFA in 0.1 M phosphate buffer (pH 7.4) with 0.7% (wt/vol) NaCl, and spinal cords were dissected and postfixed overnight. Specimens were rinsed in 0.1M cacodylate, postfixed in 1% osmium tetroxide (Agar Scientific), dehydrated, and embedded in Durcupan resin (Sigma). Semithin sections (750 nm) were cut on a Leica UCT ultramicrotome using a Histo knife (Diatome) and mounted on microscope slides. Semithin sections were incubated in a 1% toluidine blue solution for 43 s at 60 °C and rinsed with water. Brightfield images of healthy vWM tissue derived from lesioned spinal cords were acquired on a Leica DM5500 microscope. The number of myelinated axons were counted by a blinded observer on three to four sections per animal as above.
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3

Transmission Electron Microscopy Tissue Prep

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Animals were fixed with 2% glutaraldehyde in 0.1 M Nacacodylate buffer, pH 7.3, for 2 h at room temp, rinsed in buffer, and post-fixed with 1% OsO4 in a buffer for 1 h at room temp. The post-fixed samples were then rinsed with water, stained en bloc with 5% uranyl acetate in water, dehydrated in ethanol and propylene oxide, and embedded in Eponate 12 resin (Ted Pella, Inc., Redding, CA). 50 nm sections were cut with a Leica UCT ultramicrotome using a Diatome diamond knife, picked up on slot grids with Pioloform films, stained with uranyl acetate and Sato’s lead, and examined with an FEI T12 TEM at 120 kV equipped with a Gatan Ultrascan 4k × 4k camera.
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4

Ultrastructural Analysis of A549 Cells

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A549 cells attached to ACLAR film69 (link) were treated for 24 hours with 249C (250 nM) or BafA1 (10 nM) or DMSO as a control. The cells on film were then fixed by immersion in 2% glutaradehyde in 0.08 M Na-cacodylate buffer, pH 7.3 containing 2 mM CaCl2 that had been prewarmed to 37 ° C for 1 hour with gentle agitation during which the fixative cooled to room temperature. The samples were then rinsed with 0.1 M Na-cacodylate buffer at room temp., post-fixed with 1% OsO4 containing 1.5% potassium ferrocyanide in 0.1 M Na-cacodylate buffer for 45 min on ice, rinsed with water, en bloc stained with 3.5% uranyl acetate in water for 1 hour at room temp., dehydrated in ethanol followed by propylene oxide, and embedded in Eponate 12 resin (Ted Pell, Inc, Redding, CA). Thin sections were cut with a Leica UCT ultramicrotome using a Diatome diamond knife and picked up on Pioloform films on slot grids. The grids were then post-stained with 1% uranyl acetate followed by Sato’s lead70 (link). Sections were imaged with an FEI T12 TEM equipped with a Gatan U895 4k × 4k camera at 120 kV [software: DigitalMicrograph (version 3.4.3) and SerialEM (version 3.8.6)]. Quantification was performed with custom Python image analysis software. MEFs were processes in a similar way.
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