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Proliferating cell nuclear antigen (pcna)

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PCNA (Proliferating Cell Nuclear Antigen) is a protein involved in DNA replication and repair processes. It serves as a processivity factor for DNA polymerase, enhancing its ability to replicate DNA. PCNA is a commonly used marker for cell proliferation and is often employed in research applications to study cell cycle dynamics and cell growth.

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7 protocols using proliferating cell nuclear antigen (pcna)

1

Histopathological and Immunohistochemical Analysis

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Upper right mammary glands and left lungs inflated with PBS were fixed in 10% NBF for 48 h for histopathology and immunohistochemistry. Citrate or EDTA buffer was used for antigen retrieval, and hydrogen peroxide was used to quench endogenous peroxidase activity. Sections were immunostained with pSTAT3 or pERK (1:50, Cell Signaling) and biotinylated anti-rabbit secondary (Cell Signaling), CD45 (1:100, BioScience) and anti-rat secondary (Vector), or PCNA (1:100 Biolegend) antibodies and biotinylated anti-mouse secondary (Cell Signaling). Signal was detected using a DAB kit (Cell Signaling). Sections were counterstained with hematoxylin (Vector).
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2

Western Blot Analysis of Protein Biomarkers

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If necessary, the dermis was separated from the epidermis manually using forceps. After cryogenic grinding, tissues were lysed with RIPA buffer containing a protease inhibitor cocktail (Roche, Bâle, Switzerland). Protein extracts (15µg) were then loaded onto a 12% reducing SDS-PAGE gel. After transfer on a nitrocellulose membrane (Bio-Rad, CA, USA), and blocking in TBS containing 0.1% Tween-10 and 5% nonfat milk for 1 hour, blots were incubated overnight at 4 °C with mouse primary antibodies: PCNA (Biolegend, CA, USA, 1:1000), or with rabbit primary antibodies: CD45 (Abcam, Cambridge, England, 1:1000), STAT1, and p-STAT1, (all Cell Signaling Technology, MA, USA, 1:1000), or with a goat anti-GAPDH (Bio-Rad, CA, USA, 1:20,000). Secondary antibodies used were 1:2500 dilution of goat anti-rabbit HRP labeled, goat anti-mouse HRP labeled (both Thermo Fisher Scientific, MA, USA), and rabbit anti-goat HRP labeled (Novex by Life Technologies, CA, USA). The proteins of interest were detected using the ECL Prime Western Blotting Detection Reagent (GE Healthcare, Little Chalfont, UK). Quantification of immunoblots were performed by densitometry in ImageJ.
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3

Cell Viability and Apoptosis Assays

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Chrysophanol and N-acetyl-L-cysteine were provided by Cayman Chemical (MI, USA). Cisplatin was purchased from Sigma (MO, USA). Dulbecco's Modified Eagle Medium, CellROX® Oxidative Stress Reagents, and Pierce BCA Protein Assay kit were provided by ThermoFisher Scientific (MA, USA). Fetal bovine serum was purchased from Corning (NY, USA). Penicillin/streptomycin was provided from Bioindustry (London). PhosSTOP and complete ULTRA tablets, the In Situ Cell Death Detection kit, and fluorescein were purchased from Roche (Germany). Z-VAD-FMK was provided from R&D systems (MN, USA). Anti-cyclin A2, E-cadherin, cyclin E1, cyclin D1, CDK4, cdc2, and CDK2 antibodies were purchased from Cell Signaling (MA, USA). The anti-EpCAM antibody and Apoptosis/Necrosis Assay kit were purchased from Abcam (UK). Anti-vimentin and PCNA were provided from BioLegend (CA, USA) and ABclonal (MA, USA), respectively. Anti-β actin antibody was purchased from Santa Cruz Biotechnology (TX, USA).
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4

Quantifying Cell Proliferation and Apoptosis

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60,000 cells/well in 24 well plates were fixed with 10% neutral formalin buffer, permeabilized with methanol and blocked with PBS/3% FBS. Cells were immunostained with antibodies (1:500) to: PCNA (BioLegend, cat no.307902) or cleaved caspase-3 (Asp-175; Cell Signaling Technologies, cat no.9661). PCNA was detected using secondary donkey anti-mouse Alexa-Fluor568 (Invitrogen, cat no.A10037). cleaved caspase-3 was detected using secondary donkey anti-rabbit Alexa Fluor647 (Invitrogen, cat no.A-31573). Samples were counterstained with DAPI in 50% glycerol/PBS. Four images/well were captured at 10x magnification using the FL-Auto EVOS imager.
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5

Multimodal Immunophenotyping of 3D Cultures

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Cells were fixed in neutral formalin buffer and permeabilized with methanol. 3D cultures or carcinoma tissues were immunostained using procedures described4 . Samples were incubated with antibodies (1:100) to: CCR2-FITC (Biolegend cat no. 150607), F4/80 (Abcam, cat no. ab6640), CD8 (Biolegend cat no.100715), CD69-FITC (Biolegend cat no.104505), CD11b-APC-Cy7 (BD Pharmingen cat. no.557657), Arginase-1 (Santa Cruz Biotechnology cat no.sc20150), PyVmT (Abcam cat no. 73989) or PCNA (Biolegend cat no.307902) at 4°C overnight. CD8 and F4/80 were detected with anti-rat-Alexa Fluor-568 (Invitrogen cat no.A-11077). Arginase-I was detected with anti-rabbit-Alexa Fluor-488 (Invitrogen cat no.A-11034). PyVmT was detected with anti-mouse Alexa Fluor-568 (Invitrogen cat no. A-11004). PCNA was detected with anti-mouse-Alexa Fluor-488 (Invitrogen cat no. A-11001). Samples were counterstained with DAPI and mounted using PBS:glycerol. 5 images/field were captured at 10x magnification using the EVOS FL Auto Imaging System (Invitrogen). Expression was quantified by ImageJ as described75 (link).
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6

Multimodal Immunophenotyping of 3D Cultures

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Cells were fixed in neutral formalin buffer and permeabilized with methanol. 3D cultures or carcinoma tissues were immunostained using procedures described4 . Samples were incubated with antibodies (1:100) to: CCR2-FITC (Biolegend cat no. 150607), F4/80 (Abcam, cat no. ab6640), CD8 (Biolegend cat no.100715), CD69-FITC (Biolegend cat no.104505), CD11b-APC-Cy7 (BD Pharmingen cat. no.557657), Arginase-1 (Santa Cruz Biotechnology cat no.sc20150), PyVmT (Abcam cat no. 73989) or PCNA (Biolegend cat no.307902) at 4°C overnight. CD8 and F4/80 were detected with anti-rat-Alexa Fluor-568 (Invitrogen cat no.A-11077). Arginase-I was detected with anti-rabbit-Alexa Fluor-488 (Invitrogen cat no.A-11034). PyVmT was detected with anti-mouse Alexa Fluor-568 (Invitrogen cat no. A-11004). PCNA was detected with anti-mouse-Alexa Fluor-488 (Invitrogen cat no. A-11001). Samples were counterstained with DAPI and mounted using PBS:glycerol. 5 images/field were captured at 10x magnification using the EVOS FL Auto Imaging System (Invitrogen). Expression was quantified by ImageJ as described75 (link).
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7

Evaluating eESC Phenotypes and NK Cells

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After treatment with PPD (40 µM) or EsA (40 µM), or co-culture with control eESCs (ESC-NK) or PPD-pretreated eESCs (ESC-PPD-NK), these eESCs were collected and the expression levels of Bcl-2, Bcl-xL, Bax, Ki-67, PCNA, and or CD82 (all from Biolegend, USA) were analyzed by FCM according to the manufacturer’s instructions. In addition, the expression levels of IFN-γ, IL-10, NKG2A, NKp30, and NKp40 (all from Biolgend) in CD56+NK cells were analyzed by FCM. Isotypic IgG antibodies were used as controls. The samples were analyzed using a FACS-Calibur flow cytometer (Becton Dickinson, USA) and Cellquest software (Becton Dickinson). Statistical analysis was conducted using isotype-matched controls as references.
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