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Small interfering rnas sirnas

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Small interfering RNAs (siRNAs) are a type of double-stranded RNA molecule that play a role in the RNA interference (RNAi) pathway. Their core function is to target and silence specific genes by binding to complementary messenger RNA (mRNA) molecules, preventing their translation into proteins.

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2 protocols using small interfering rnas sirnas

1

Hepatocyte Isolation and EGR1 Promoter Analysis

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Human hepatoma cells (HepaRG, Thermo Fisher, San Jose, CA, USA) were maintained in DMEM supplemented with 10% FBS (Hyclone, Logan, UT, USA). Primary murine hepatocytes were isolated as previously described24 ,25 and seeded at 2 × 105 cells/well for 12-well culture dishes, or 4 × 105 cells/well for 6-well culture dishes, or 4 × 106 cells/well for p100 culture dishes. Cell viability was examined at the time of seeding by trypan blue staining; typical isolation yielded >95% viability. EGR1 promoter-luciferase construct was generated by amplifying genomic DNA spanning the proximal promoter and the first exon of EGR1 gene (-900/+50) and ligating into a pGL3-basic vector (Promega, Madison, WI, USA). Truncation mutants were made using a QuikChange kit (Thermo Fisher Scientific, Waltham, MA, USA) and verified by direct sequencing. Small interfering RNAs (siRNAs) were purchased from Dharmacon (Lafayette, CO, USA). Transient transfections were performed with Lipofectamine 2000 (Thermo Fisher Scientific). Luciferase activities were assayed 24–48 h after transfection using a luciferase reporter assay system (Promega) as previously described.26
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2

Constructs Encoding IQGAP1 Isoforms

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Constructs encoding Myc-IQGAP1 (WT), IQGAP1ΔWW (ΔWW), IQGAP1ΔIQ (ΔIQ), IQGAP1ΔCHD (ΔCHD), IQGAP1-N (N), IQGAP1-N1 (N1) and IQGAP1-N2 (N2) have been described before [25 (link)]. HA-RASSF1A, FLAG-MST2, FLAG-LATS1 Myc-LATS1 (D846A), Flag-YAP1, Flag-YAP1 (S127A), HA-p73 and β-Galactosidase, have been described before [5 (link),10 (link),25 (link),26 (link),27 (link)]. p73 luciferase reporter PUMA-Frag1 (a gift from Bert Vogelstein, Addgene plasmid # 16591) and luciferase reporter TEAD 8XGTIIC LUC (a gift from Stefano Piccolo, Addgene plasmid # 34615) constructs were acquired from Addgene (Watertown, MA, USA ) [28 (link)]. Small interfering RNAs (siRNAs) against MST2, LATS1 and YAP1 were from Dharmacon (Lafayette, CO, USA) and have been validated before [5 (link)]; IQGAP1 siRNA LQ-004694-00- was also from Dharmancon.
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