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5 protocols using chemidoc mp station

1

Western Blot Protein Detection

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The SDS-PAGE separated proteins were electroblotted on a polyvinylidene difluoride (PVDF) membrane. An anti-His(C-term)-HRP antibody was applied according the manufacturer's instructions (Invitrogen). Chemiluminescence was initiated through the Western Lightning Plus-ECL reagent (Perkin Elmer) and visualized on a ChemiDoc MP station (BioRad).
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2

Protein Extraction and Western Blot Analysis

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Protein extracts were isolated from the hearts of 15-day-olds extracted with RIPA lysis buffer (50 mM Tris-HCl at pH 7.4, 150 mM NaCl, 1% Triton X-100, 1% sodium deoxycholate, 0.1% SDS, 1 mM dithiothreitol (DTT), 5 mM EDTA, and Halt Protease and Phosphatase Inhibitor Cocktail from Thermo Fisher Scientific), and the protein concentration was measured using DC Protein Assay kits (Bio-Rad).
Equal quantities of proteins were resolved by SDS-PAGE gels and blotted onto polyvinylidene difluoride membranes (Millipore). Then, the membranes were blocked with 2% bovine serum albumin (BSA) before incubation with the primary and secondary antibodies. The immunoblots were visualized by using Luminata -Immobilon Crescendo Western HRP Substrate (Millipore) on a ChemiDoc MP station (Bio-Rad). Image analysis was performed using Image Lab software version 5.2 (Bio-Rad). The antibodies used for the western blots were as follows: anti-Srsf3 (Abcam, ab198291) anti-Gapdh (Cell Signaling, 2118), anti-Tim50 (Santa-Cruz, sc-393678), anti-Tom20 (Abcam, ab186735), Total OXPHOS antibodies (Abcam, ab110413), and anti-Uqcrc1 (ThermoScientific, PA5-21394).
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3

Cardiac Gene Expression Quantification

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Total RNA was extracted from hearts using RNeasy Mini kits (Qiagen) according to the manufacturer's protocol. A total of 1000 ng of total RNA was used to prepare cDNA in a 20 µL reaction with Script Reverse Transcription Supermix (Bio-Rad). qPCR was performed on technical duplicates with cDNA diluted 30x and SsoAdvanced Universal SYBR Green Supermix (Bio-Rad) via a Mastercycler ep RealPlex (Eppendorf). qPCR analysis was performed by the 2(-ΔΔCt) method, normalizing to RPL30.
Splicing PCR was performed with Q5 High-Fidelity DNA Polymerase (New England Biolabs), and 5 L of the cDNA was diluted 30x. Thirty cycles of PCR were used to produce the optimal band detectable in a 2% agarose gel. A ChemiDoc MP station (Bio-Rad) was used to reveal the ethidium bromide-stained agarose gel, and image analysis was performed using Image Lab software version 5.2 (Bio-Rad).
Primers are listed in Appendix Table S3.
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4

Protein Extraction and Western Blot Analysis

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Protein extracts were isolated from the hearts of 15-day-olds extracted with RIPA lysis buffer (50 mM Tris-HCl at pH 7.4, 150 mM NaCl, 1% Triton X-100, 1% sodium deoxycholate, 0.1% SDS, 1 mM dithiothreitol (DTT), 5 mM EDTA, and Halt Protease and Phosphatase Inhibitor Cocktail from Thermo Fisher Scientific), and the protein concentration was measured using DC Protein Assay kits (Bio-Rad).
Equal quantities of proteins were resolved by SDS-PAGE gels and blotted onto polyvinylidene difluoride membranes (Millipore). Then, the membranes were blocked with 2% bovine serum albumin (BSA) before incubation with the primary and secondary antibodies. The immunoblots were visualized by using Luminata -Immobilon Crescendo Western HRP Substrate (Millipore) on a ChemiDoc MP station (Bio-Rad). Image analysis was performed using Image Lab software version 5.2 (Bio-Rad). The antibodies used for the western blots were as follows: anti-Srsf3 (Abcam, ab198291) anti-Gapdh (Cell Signaling, 2118), anti-Tim50 (Santa-Cruz, sc-393678), anti-Tom20 (Abcam, ab186735), Total OXPHOS antibodies (Abcam, ab110413), and anti-Uqcrc1 (ThermoScientific, PA5-21394).
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5

Cardiac Gene Expression Quantification

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Total RNA was extracted from hearts using RNeasy Mini kits (Qiagen) according to the manufacturer's protocol. A total of 1000 ng of total RNA was used to prepare cDNA in a 20 µL reaction with Script Reverse Transcription Supermix (Bio-Rad). qPCR was performed on technical duplicates with cDNA diluted 30x and SsoAdvanced Universal SYBR Green Supermix (Bio-Rad) via a Mastercycler ep RealPlex (Eppendorf). qPCR analysis was performed by the 2(-ΔΔCt) method, normalizing to RPL30.
Splicing PCR was performed with Q5 High-Fidelity DNA Polymerase (New England Biolabs), and 5 L of the cDNA was diluted 30x. Thirty cycles of PCR were used to produce the optimal band detectable in a 2% agarose gel. A ChemiDoc MP station (Bio-Rad) was used to reveal the ethidium bromide-stained agarose gel, and image analysis was performed using Image Lab software version 5.2 (Bio-Rad).
Primers are listed in Appendix Table S3.
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