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6 protocols using vimentin

1

Immunohistochemical Analysis of Bone Formation Markers

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Immunohistochemistry was performed on decalcified and paraffin-embedded sections. The latter were dewaxed using EZ Prep, hydrated, and heat-treated for 30 min at 60°C. Sections were then incubated according to the manufacturer's instructions, at room temperature, with the prediluted monoclonal antibodies RUNX-2 (1 : 200, Abcam) and OCN (1 : 200, Abcam) to identify bone formation whereas vimentin (1 : 80, Biogenex) was used to identify mesenchymal cells and osteoblasts (Table 1). The immunohistochemical study was done on an automatic immunostainer (Ventana-Benchmark XT). All slides were visualized using an Olympus BX51 microscope, and images were captured by digital camera and cellSens software. The immunohistochemical expressions of the markers are the following: for the RUNX-2, the nuclei of osteoblasts; for the OCN, the bone matrix, osteocytes, and osteoblasts; and for the vimentin, the osteocytes, osteoblasts, and mesenchymal cells.
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2

Immunohistochemical and Ultrastructural Analysis of Tumor Tissue

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Formalin-fixed, paraffin-embedded tumor tissues were subjected to immunohistochemical staining. Antibodies against renin (1: 100, Abcam), CD34 (1: 100, DAKO), Ki-67 (1: 200, DAKO), vimentin (1: 200, BioGenex), Syn (1: 200, Abcam), and CgA (1: 200, Leica) were applied. Gomori’s reticulin staining was used for the identification of reticular fibers.
Small pieces of formaldehyde-fixed tumor tissue from 9 cases were postfixed in glutaraldehyde and routinely examined by electron microscopy.
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3

Tumor Margin Characterization by IHC

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The hematoxylin and eosin sections of the tumor were studied and the infiltrative margin was marked under microscopy. The paraffin embedded biopsy blocks were retrieved from our pathology archives. The paraffin embedded sections were subjected to immunohistochemical staining (IHC) using E-cadherin (ready to use; BioGenex, Fremont, CA. REF: AM390-5M, LOT: AM3900517) and Vimentin (ready to use; BioGenex, Fremont, CA. REF: AM074-5M, LOT: AM0740616).
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4

Immunohistochemical Analysis of Aortic Proteins

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Sections of aorta were deparaffinised and treated with PBS for 30 min at room temperature. The slides were incubated for 30 min with primary anti-eNOS (1:50 rabbit polyclonal, RR-1711-R7, Neomarkers; Lab Vision, Fermont, CA, USA), anti-INOS (mouse momoclonal antibody (BD transduction Lab, USA) and vimentin (1:500 dilution; BioGenex) antibodies. After three washes with PBS, the sections were incubated with biotinylated secondary antibody, and incubated with peroxidase substrate. Antibody labeled specimens were rinsed with distilled water for 5 min and dehydrated. Positive cytoplasmic immune reaction appeared as brown dots against blue background of Mayer’s hematoxylin stain (20 (link), 21 (link)).
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5

Immunohistochemical Characterization of Canine Melanocytes

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Collected tumor tissues from dogs and xenograft were fixed in 10% buffered formalin solution (Sigma-Aldrich, St Louis, MI) and paraffin embedded for routine pathological analysis. Immunohistochemical staining was carried out on 4- to 6-μm-thick slides using an automated protocol developed for the Discovery XT automated slide staining system (Ventana Medical Systems, Inc.). Alongside haematoxylin–eosin staining (HE), the following commercially available antibodies were used for the phenotypical characterization of melanocytes: Melan-A (Thermo Fisher Scientific, Waltham, MA), S-100 protein (Dako, Agilent Technologies, Denmark), Vimentin, and cytokeratin (Biogenex Laboratories, San Ramon, CA) (see Additional file 1). Tumor sections were deparaffinized and incubated for 1 h with the appropriate antibody before incubation with Discovery UltraMap anti-Rabbit (760–4315, Roche, Basel, Switzerland) or anti-mouse horseradish peroxidase (HRP) (760–4313, Roche, Basel, Switzerland) secondary antibodies and the Discovery ChromoMap DAB kit reagents (760–159, Roche, Basel, Switzerland) (Additional file 1).
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6

Immunohistochemical Analysis of Kidney Injury

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For injury marker detection, 10 µm slides from each swine in cREBOA and iREBOA groups were cut from the cortex of fresh frozen kidneys (stored in − 70 °C). Primary antibodies were diluted in 5% donkey serum and 95% primary buffer (0.01 M PBS + 0.1% NaN3 + 0.3% triton + 5% bovine serum albumin). NKCC2 antibody (1:2000, Everest Biotech, EB09143) was combined with either Osteopontin (1:400 Abcam 8448, Product ID: GR5225573-4), NGAL (1:1000, BioSite, Product ID: GTX60965) or Vimentin (1:100, BioGenex, Product ID: MU074-UC). Slides were rinsed for 10 min in PBS and incubated with primary antibodies overnight at 4 °C. Then, slides were rinsed and incubated with secondary antibodies for 1 h in room temperature, and all dilutes were 1:400 in 5% swine serum and secondary buffer (0.01 M PBS + 0.1% NaN3 + 0.3% triton). A mixture of Cy2 (Jackson ImmunoResearch, Product ID: 705225147) and of Cy3 (Jackson ImmunoResearch, Product ID: 715165151) was used for slides stained with Osteopontin or Vimentin. For slides stained with NGAL, a mixture of Cy2 (Jackson ImmunoResearch, Product ID: 705225147) and of Cy3 (Jackson ImmunoResearch, Product ID: 711165152) was used. Slides were then rinsed in 0.01 M PBS and mounted with Mowiol.
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