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Fluorescein isothiocyanate (fitc)

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FITC (Fluorescein Isothiocyanate) is a fluorescent dye commonly used in laboratory applications. It is a small molecule that can be conjugated to various biomolecules, such as proteins, antibodies, and other ligands, to enable their detection and visualization. FITC emits green fluorescence when excited by light at the appropriate wavelength.

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150 protocols using fluorescein isothiocyanate (fitc)

1

Measuring BRCA1 DNA Repair Foci

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Cells were plated directly on a coverslip and allowed to adhere with overnight incubation. The following day, the cells were irradiated and fixed with 4% paraformaldehyde for 10 minutes at room temperature. Cells were then washed with PBS and permeabilized with 70% ethanol overnight at 4°C and for 20 minutes with 0.1% Igepal at room temperature. Cells were washed, blocked with 2% BSA for 1 hour and incubated overnight with 1:1,000 Aurora Kinase A antibody (Cell Signaling Technology). Centrosomes were visualized by 1 hour incubation with a 1:500 AlexaFluor 594 fluorochrome (Invitrogen). Cells were then incubated with 1:500 alpha tubulin (Santa Cruz Biotechnology) for 1 hour at room temperature. Mitotic spindles were visualized by 1 hour incubation with 1:600 FITC (Jackson ImmunoResearch), and DNA was stained with 1 μg/mL DAPI (RRID:AB_2893474; Sigma). Pictures were captured with a Leica microscope.
BRCA1 foci were visualized by incubating 1:500 BRCA1 antibody overnight (Santa Cruz Biotechnology) and 1:600 FITC (Jackson ImmunoResearch) for 45 minutes at room temperature. Foci for at least one hundred cells were manually counted per experiment using ImageJ software. Each foci experiment was repeated at least once.
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2

Immunofluorescence Analysis of Liver Macrophages

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Liver samples were fixed in 4% paraformaldehyde and embedded in Tissue Tek OCT compound (Electron Microscopy Sciences, Japan). Five micrometers of frozen section were used for immunofluorescence. After blocked with 3% BSA (Roche, Switzerland), the sections were incubated with F4/80 antibody (1:250, Santa Cruz Biotechnology, Santa Cruz, CA) followed by secondary antibody conjugated with FITC (1:100, Jackson Immuno-Research, West Grove, PA). At last, nuclei were stained with DAPI. The number of F4/80+ cells were measured by ImageJ software (an open source Java image processing program, http://imagej.net/). Mouse primary hepatocytes or AML-12 cells were fixed with 4% paraformaldehyde for 30 minutes and permeabilized with 0.5% Triton X-100 (Amresco, OH) for 15 minutes. After blocked with 3% BSA, they were incubated with MIF antibody (1:200, Santa Cruz Biotechnology, Santa Cruz, CA) followed by secondary antibody conjugated with FITC (1:100, Jackson Immuno-Research, West Grove, PA). At last, nuclei were stained with DAPI.
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3

Immunohistochemical Analysis of Mouse Skin

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Standard histology and immunostaining protocols (including H&E and Trichome) were performed. Briefly, immunohistochemical analysis was performed on 5- to 10-μm-thick sections of mouse skin. The following primary antibodies were used: mouse monoclonal anti-Ki-67 (1:100; Novocastra), rabbit polyclonal anti-GFP (1:200; Abcam), rabbit polyclonal anti-Sdf1 (1:100; Abcam), mouse monoclonal anti-α smooth muscle actin (1:100; Abcam), rabbit polyclonal anti-CD31 (1:100; Abcam), rat anti-mouse CD45 (1:100; BioLegend), and rabbit polyclonal anti-Cxcr4 (1:100; Abcam). Immune complexes were detected with secondary antibodies conjugated with either Cy3, Cy5, fluorescein isothiocyanate (Jackson ImmunoResearch), or horseradish peroxidase (Vector Laboratories). In situ hybridization on Cxcl12 was performed per the manufacturer's instructions (Advanced Cell Diagnostics); a positive control probe was directed against RNA polymerase, and a negative control probe was directed against bacterial DapB. After staining, images were directly analyzed on an AxioM1 microscope equipped with a CCD digital camera (Carl Zeiss). The number of Ki-67+ cells was counted for every 250 μm of cartilage, measured at the distal tip, for each sample. A minimum of four different samples was used for each time point and then averaged.
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4

GPC3 Expression Visualization in Cells

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Cells were seeded into 96-well cell-culture plates (#TCP011024, JET BIOFIL) with 1 × 105 cells/0.1 ml/well, After 24 h culture, the supernatants were discarded and the cells were rinsed twice with 100 μl of sterile PBS, then 100 μl of 2 μg/ml anti-hGPC3 scFv-SpyTag diluted with PBS containing 2% FBS was added to each well and incubated at room temperature (RT) for 15 min with gentle shaking. After washing with PBS, 100 μl of 1.5 μg/ml fluorescein isothiocyanate (FITC)-labeled goat anti-mouse IgG F(ab’)2 fragment (#115-095-072, Jackson ImmunoResearch Laboratories) was added and incubated at RT for 15 min. After the final wash, 100 μl of sterile PBS was added to each well and the results were observed; images were captured with an Olympus inverted fluorescence microscope (Olympus, Tokyo, Japan).
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5

Immunolabeling of Dispersed Islet Cells

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Dispersed islet cells on chamber slides were fixed in 2% paraformaldehyde/PBS for 15 min and immunolabeled (11 (link),12 (link),16 (link),17 (link),41 (link),42 (link)). Briefly, after antigen retrieval with NaCitrate (Dako), cells were incubated overnight with primary antisera (Supplementary Table 2). For BrdU or Ki-67 immunostaining, a second antigen retrieval was performed using 2 N HCl at 25°C for 10 min before primary antibody incubation. Antigen–antibody complexes were incubated further with secondary antibodies conjugated with either Cy3, fluorescein isothiocyanate (Jackson ImmunoResearch), or AlexaFluor (Life Technologies). Cells were counterstained with DAPI. Images were captured on a Leica SP5 DM confocal microscope and analyzed using ImagePro software. In each BrdU incorporation experiment, a minimum of 1,000 insulin-positive cells were counted.
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6

Quantifying Microglia/Macrophages in Optic Nerve

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ED1 (CD68) is a marker of activated microglia/macrophages [68 (link),69 (link),74 (link)]. Briefly, the frozen ON sections were fixed on a 37 °C dry bath for 10 min, and they were blocked with 3% BSA for 1 h. The ED1 primary antibody (1:100; Abcam, San Francisco, CA, USA) was incubated with the ON section overnight at 4 °C. On the next day, the secondary antibody conjugated with fluorescein isothiocyanate (1:500; Jackson ImmunoResearch Laboratories, West Grove, PA, USA) was applied at room temperature of 23℃ for 1 h, and counterstaining was performed using DAPI (1:1000; Sigma, St. Louis, MO, USA), which expressed the nucleus of ON cells. Then, we counted the ED1-positive cells of the ON lesion sites in 6 HPF (400× magnification) (n = 6 each group).
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7

Immunofluorescence Visualization of Endothelial Markers

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Fixed frozen sections were created as previously described15 (link). The sections were incubated with primary antibodies (anti-ZO-1, Abcam, and
anti-von Willebrand factor, Millipore, Temecula, CA, USA) at 4°C overnight, followed by
secondary antibodies (fluorescein isothiocyanate and Texas Red, Jackson Immunoresearch,
West Grove, PA, USA) for 2 h at room temperature. Immunofluorescence was observed under a
fluorescence microscope (Olympus OX51, Tokyo, Japan).
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8

Flow Cytometry Cell Labeling Analysis

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Live cells were incubated with mAb-3H11 (made in our laboratory by affinity-purification from mouse ascites using sepharose protein A; 1 µg/µl; 1:100 dilution) or an anti-Myc (1:100 dilution; cat. no. ab32; Abcam, Cambridge, UK) antibody at 37°C for 20 min, prior to being incubated with fluorescein isothiocyanate (FITC)-labeled goat anti-mouse secondary antibodies (cat no. 115-095-003; 1:100 dilution; Jackson ImmunoResearch Laboratories, Inc., West Grove, PA, USA) at 37°C for 20 min, followed by analysis on a BD Accuri C6 Cytometer using C6 software (version 1.0.264.21; BD Biosciences, Franklin Lakes, NJ, USA).
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9

Immunohistochemical Analysis of Liver Tissue

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Blocks of liver tissue that were Paraffin-embedded were cut into 5-μm thick sections, paraffin was removed from these slides, and they were rehydrated for subsequent staining. Immunofluorescence and immunohistochemistry methodology were previously described [4 (link)]. The primary antibodies used were: p-insulin Rβ (Tyr 1361), p-Akt (Ser473), p-ERK1/2 (T202/Y204), Abcam Inc. (Toronto, Canada), SREBP-1c, NF-κB p65, ChEBP and p-GSK3β (Ser9) (Santa Cruz, CA, USA), p-insulin Rβ antibody (T1375), p-S6K1 (T389), and p-IRS (S307) from Merck Millipore (Toluca, Mexico). The secondary antibodies were: fluorescein isothiocyanate (FITC) and rhodamine red (Jackson ImmunoResearch Laboratories). Arbitrary units (pixels) were semi-quantified and normalized using the ImageJ program (National Institute of Health).
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10

Immunohistochemical Analysis of Pancreatic Islets

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The pancreas was immersed in Bouin's solution, embedded in paraffin and sectioned at a thickness of 4–5 μm. The sections were stained with antibodies to insulin and glucagon (Agilent Technologies, Santa Clara, CA, USA). Immune complexes were detected with secondary antibodies conjugated with either cyanine 3 or fluorescein isothiocyanate (Jackson ImmunoResearch Laboratories, West Grove, PA, USA). Quantitation of α‐cell and β‐cell mass was described previously14, 15. For terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL) staining, pancreas sections were labeled with an Apoptosis in situ Detection Kit (Wako, Osaka, Japan). For Ki67 staining, pancreas sections were incubated with an anti‐Ki67 antibody (Abcam, Cambridge, UK) and a secondary antibody conjugated to cyanine 3 staining. For anterior gradient 2 (AGR2), trefoil factor 2 (TFF2) and gastrokine 3 (GKN3) staining, pancreas sections were incubated with an anti‐AGR2 antibody (Proteintech, Chicago, IL, USA), anti‐TFF2 antibody (Proteintech) or anti‐GKN3 antibody (Cloud‐Clone Corp., Katy, TX, USA), respectively, and a secondary antibody conjugated to cyanine 3 staining.
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