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7 protocols using wga alexa fluor 647

1

Cytoskeletal Characterization of Cardiomyocytes

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After returning to the earth, the fixed cardiomyocytes were adopted for immunofluorescence staining against α-Actinin (Abcam, USA) and cTnT (Proteintech, China) to illustrate the cytoskeleton morphology, and the nuclei were stained with Hoechst 33342 (Molecular Probes, USA). The labeled cells were imaged by confocal microscopy (ZEISS, Germany). ImageJ software analyzed the sarcomere length by calculating the distance between intensity peaks. Five sarcomeres were measured along the long axis direction and then averaged to measure sarcomere length. A large number of sarcomeres (n > 10) were calculated to compare the sarcomere length.22 (link) The ImageJ and Matlab software were used for orientation analysis of the sarcomere structure and myofilament arrangement. A higher-order cytoskeleton presents a highly centralized orientation, and any cytoskeletal remodeling and depolymerization will lead to a random orientation. To quantify the level of cTnT, we acquired a minimum of five images to analyze fluorescent intensity. In addition, we measured the cell size of cardiomyocytes after Alexa Fluor 647-WGA staining (Thermo Fisher, USA) to assess whether cardiac atrophy occurred in tail-suspension mice. All antibodies are listed in Supplementary Table 2.
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2

Fluorescent Labeling of C. albicans Cells

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Samples containing 2 x 10 6 C. albicans yeast cell or their equivalent of hyphae were transferred to 96-well V-bottom plates. Plates were centrifuged at 5.000 x g for 10 min and the supernatants were removed. Cells were resuspended in 100 µl dPBS containing 5 µg/ml of wheat germ agglutinin Alexa Fluor® 647 (WGA, 1:200, Thermo Fisher) and 50 µg/ml concanavalin A Alexa Fluor® 488 (ConA, 1:200, Thermo Fisher), and incubated for 1 h at 4 °C in the dark. For chitinase staining, after incubation with recombinant CHIT1 (His-tagged, [42] (link)), cells were stained with anti-His Alexa Fluor® 594 in 100 µl dPBS overnight at 4 °C. Cells were then centrifuged and washed twice with cold dPBS. Cells were resuspended in 5 µl ProLong™ Diamond Antifade Mountant solution (Thermo Fisher). The mounting solution containing stained yeast or hyphae was transferred to glass slides and covered with a coverslip. Slides were stored at RT in the dark until the mounting solution had hardened and then imaged with a Zeiss LSM 800 AiryScan Inverted Confocal Microscope at 630 X magnification in AiryScan mode using a 1.5 X zoom.
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3

Quantifying Cardiomyocyte Size via WGA Staining

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WGA staining and quantification was performed as per prior report[3 (link)]. Briefly, the slides were incubated with WGA conjugated to Alexa Fluor 488 (50 mg/mL, Life Technologies) for 1 h at room temperature following PBS washes. To quantify the cross-sectional cardiomyocyte cell size, three to four independent hearts per genotype/group were captured at 40× magnification from three different views and positions (e.g., right ventricle, left ventricle, septum). Cellprofiler was used to quantify the size of cardiomyocytes, which were round and had a nucleus[4 ]. Quantification of at least 500 cells per sample was performed. For cell size after MI, WGA-Alexa Fluor 647 (Thermo Fisher W32466) was used with DAPI counterstain; 50 cells per sample were counted.
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4

Histological Assessment of Xenograft Regeneration

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Frozen muscles were sectioned at 8 μm thicknesses using a Leica CM1950 cryostat maintained at −20℃. The muscle sections were first stained with hematoxylin and eosin (H/E) for histological assessment of xenograft regeneration. Muscle sections were also immunostained with human‐specific spectrin (SPEC1‐CE, 1:50, Leica) and human‐specific lamin A/C (ab40567, 1:200, Abcam), while total muscle tissue was marked by 4′6‐diamidino‐2‐phenylindole (DAPI) staining (outside human‐marked tissue) or by immunostaining with fluorescently conjugated wheat germ agglutinin (WGA alexafluor‐647, W32466, 1:500, Thermo Fisher Scientific). Specifically, muscle sections were fixed in ice‐cold methanol for 10 minutes, washed in phosphate‐buffered saline (PBS), and blocked in PBS supplemented with 2% goat serum (GTX73249, GeneTex) and mouse‐on‐mouse (M.O.M.) blocking reagent (MKB‐2213, Vector Laboratories). Muscle sections were incubated with primary antibodies overnight at 4℃ and subsequently probed with Alexa Fluor secondary antibodies (Life Technologies). Finally, muscle sections were mounted with Prolong Gold Mounting Media (Life Technologies) with DAPI for nuclear staining.
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5

Flow Cytometry-based ABCG2 Quantification in RBCs

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The measuring of ABCG2 levels in RBCs were carried out according to a recently developed flow cytometry-based method [25 (link), 29 (link), 30 ]. Blood samples were freshly collected (2–6 h before the flow cytometry analysis). We fixed and permeabilized the RBC membranes by using 1% formaldehyde solution, resulting in RBC “ghosts”. WGA-Alexa Fluor 647 (Thermo Fisher, cat. W32466, final cc. 1 µg/ml) were added to the fixed and washed RBC ghosts to separate them from debris during flow cytometry. Ghosts were incubated with the ABCG2-specific primary antibody (Bxp-34, mouse monoclonal antibody, Abcam, cat. ab3379) followed by a secondary, Alexa Fluor 488-labeled goat anti-mouse (H + L) antibody (Thermo Fisher, A-11001), in 96 well plates. Cellular fluorescence was measured twice each case by a FACSCanto II flow cytometer equipped with a plate loader. The agreement between the two measurements were tested by intraclass correlation coefficient (ICC). ICC estimates and their 95% confident intervals were calculated based on an absolute-agreement, 2-way model (package irr in R). Intraclass correlation coefficient (ICC) showed strong significant agreement between the two measurements of Bxp34 (ICC = 0.988, 95% confident intervals were: 0.982–0.991, p < 0.001). Therefore, we used the average of the two results for further analysis.
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6

Visualizing Cell-Cell Interactions

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K562 cells were transfected by nucleofection (Amaxa Nucleofector Technology, Lonza AG) using a GPI-GFP plasmid (kind gift from D. Davis). After 24 h cells were sorted based on GFP fluorescence and co-cultured with HS-5 cells on Lab-Tek Chamber Slides (ThermoFisher Scientific) for 48 h. Additionally, both cell types were stained with WGA-Alexa Fluor 647 (ThermoFisher Scientific). Images were acquired using an SP8 Leica microscope with a ×63 objective and analyzed using ImageJ software.
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7

Triple Labeling of Blood, Conduit, and Lymphatic Vessels in Murine Lymph Nodes

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To achieve triple staining of the blood vasculature, conduit channels, and lymphatic vessels in popliteal and inguinal LNs, briefly anaesthetized C57BL/6 mice were first injected with 50 μL anti-LYVE-1-Alexa Fluor 488 antibody (20 μg/mL, R&D Systems, Minneapolis, MN) into the rear right hock, an alternative injection site to the footpad, which is less invasive while allowing strong labeling [73 (link)]. After 8 h, 50 μL WGA-Alexa Fluor 647 (1 mg/mL, Invitrogen, Thermo Fisher Scientific, Waltham, MA) were injected in the same site, and after a circulation period of 1 h, the blood system of the whole body was labeled by injecting 100 μL of WGA-Alexa Fluor 555 (5 mg/mL, Invitrogen, Thermo Fisher Scientific, Waltham, MA) with 10 μL Heparin (100 units/mL) into the tail vein or vena cava of the anaesthetized mouse for a duration 2 min. Freshly excised murine tissue was fixed in 4% PFA, 3% sucrose at 4 °C overnight and embedded in LR white resin (medium grade, ProSciTech, Kirwan, Australia) for confocal imaging as described above. Standard confocal microscopy was performed using a Leica TCS SP2 equipped with a Leica HCX APO L 40.0 × 0.80 W UV water objective (Leica Microsystems, Wetzlar, Germany) at a voxel resolution of 0.36 × 0.36 × 1 μm.
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