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6 protocols using brilliance vre agar

1

Quantification of Viable Cells in Multi-species Biofilms

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The quantification of viable cells in multi-species biofilms, grown as above in the microtiter-plates, was determined using the plate counting technique. For removal of cells from the bottom of the wells, plates were carefully washed three times with a sterile PBS and 1 mL of PBS was added to each well. Using a sterile pipette tip, the biofilm was scraped. The number of viable cells was determined using MacConkey agar, Brilliance MRSA agar, and Brilliance VRE agar (Oxoid LTD, Basingstoke, UK) for E. coli, S. aureus, and Enterococcus spp., respectively. The Petri dishes were incubated at 37 °C for 24 h. The values were expressed as CFU cm2. Assays were performed in triplicates.
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2

Isolation and Characterization of VRE

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Clinical samples (tracheal aspirate, urine, blood) were collected from all patients staying in KARIM ICU to isolate potential pathogens, including VRE. All samples were inoculated onto culture agar plates (TRIOS, Praha, Czech Republic) and processed by standard procedures. Starting from April 2021, patients tested for C. difficile were parallelly tested for VRE colonization. Stool and rectal swab samples were collected and inoculated onto selective media for the isolation of VRE (Brilliance VRE Agar, Oxoid, Brno, Czech Republic). Species identification of isolates was carried out by MALDI-TOF MS (Biotyper Microflex, Bruker Daltonics, Billerica, MA, USA). From each patient, only one isolate identified as the first one from one type of clinical sample was included. Resistance to vancomycin was detected by the microdilution method according to the European Committee on Antimicrobial Susceptibility Testing (EUCAST). Enterococcus faecalis ATCC 29212 reference strain was used for quality control. Resistance to vancomycin was confirmed by detecting the relevant resistance genes as described by Hricova et al. [16 (link)]. Isolated strains were stored in cryotubes at −80 °C (Cryobank B, ITEST, Hradec Kralove, Czech Republic).
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3

Vancomycin-resistant enterococci detection

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Stool samples were cultured within 24 h of collection on Monday to Friday, or within 48 h if collected at weekends. A 10 μL loopful was added to 5 mL Brain-Heart Infusion Broth (BHI) (Merck, Darmstadt, Germany) containing 3 μg/mL vancomycin (Sigma-Aldrich, St Louis, MO, US) and incubated at 37 °C in air at 100 rpm for 24 h. A total of 200 μL was plated onto Brilliance VRE agar (Oxoid, Basingstoke, UK) and incubated at 37 °C for 48 h. Purple or blue colonies (putative E. faecium or E. faecalis, respectively) were sub-cultured on Columbia Blood agar (CBA, Oxoid, Basingstoke, UK), incubated at 37 °C for 48 h, and the species confirmed using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF) (Bruker Daltoniks, Bremen, Germany). Antimicrobial susceptibility was determined using the Vitek2 instrument (BioMérieux, Marcy l’Etoile, France) and the AST-P607 card. All stools positive for VRE were cultured for VSE. A 10 μL loopful was plated onto Brilliance UTI agar (Oxoid, Basingstoke, UK). Presumptive enterococci were sub-cultured on CBA containing a 5 μg vancomycin disc (Oxoid, Basingstoke, UK). Colonies growing at the edge of the zone of inhibition were selected for identification and antimicrobial susceptibility testing as above.
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4

Vancomycin-Resistant Enterococci Identification

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Samples were directly inoculated on Brilliance VRE agar (Oxoid, United Kingdom), as well as into bile aesculin azide broth (Liofilchem, Italy) supplemented with 6 μg/ml vancomycin (BEAV broth). The inoculated culture media were incubated aerobically at 37 °C and were examined for growth at 24 h and 48 h. The identification of the enterococci growing on Brilliance VRE agar was based on the observation of appropriately colored colonies – indigo to purple for E. faecium and light blue for E. faecalis. Growing colonies were transferred to a 5% Blood agar plate (BAP) and re-incubated for 24 h.
The positive BEAV broths that developed black color were subcultured to 5% BAP and chromID CPS Elite (bioMérieux, France) and incubated for an additional 24 h. All suspected VRE, isolated from Brilliance VRE agar and BEAV broth were identified using Vitek 2 Compact (bioMérieux, France). In cases of low-level discrimination between E. gallinarum and E. casseliflavus, motility and pigment production tests were also done.
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5

Vancomycin-resistant Enterococcus characterization

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A collection of previously characterized isolates of E. faecium (n = 13), Enterococcus faecalis (n = 11), Enterococcus gallinarum, Enterococcus casseliflavus, Enterococcus raffinosus and Enterococcus hirae was selected for testing. The isolates originated from NCTC collections (n = 12), a retrospective collection of bacteremia isolates from Cambridge University Hospitals (CUH) NHS Foundation Trust (2006–2012, n = 15), and from a meat sample (n = 1) (Table 1). They included isolates with vanA and vanB acquired resistance, and in the case of E. faecalis and E. faecium bacteremia isolates, a range of diverse hospital-adapted STs Raven et al., 2016 (link), Raven et al., 2016 ). The organisms were grown from glycerol bead vials stored at −80°C onto Columbia blood agar (CBA, Oxoid) and 200 μl of a 0.5 McFarland suspension was streaked using the four-quadrant technique onto chromID VRE agar (bioMérieux) and Brilliance VRE agar (Oxoid). Growth was assessed after 24 and 48 hours aerobic incubation at 37 °C. Vancomycin minimum inhibitory concentration was measured using Etest (bioMérieux).
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6

Selective Isolation of Antibiotic-Resistant Bacteria

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Cherry-pit-sized volumes from the stool samples provided were used for broth enrichment in thioglycolate broth (Heipha, Eppelheim, Germany) for 16–24 hours at 37°C. Subsequently, 10 μl preincubated broth was cultured on Brilliance ESBL selective agar (Oxoid, Basingstoke, UK) for the selection of third-generation cephalosporin-resistant bacteria. This agar is made for selective growth of ESBL-positive Enterobacteriaceae. An additional 10 μl for each was incubated on Brilliance VRE agar (Oxoid) for the selection of vancomycin-resistant enterococci (VRE) and on CHROMagar MRSA (CHROMagar, Paris, France) for the selection of methicillin-resistant Staphylococcus aureus (MRSA).
Agar plates were incubated at 37°C for 40–48 hours. All colonies that looked suspicious for Enterobacteriaceae on Brilliance ESBL selective agar (blue, green, brown colonies) were isolated, while suspected Gram-negative nonfermentative rod-shaped bacteria (i.e., yellow or yellowish-brown or greenish-brown colonies) were discarded. Similarly, only colonies that appeared suspicious for MRSA and VRE were selected for further analysis. Suspected enterococci were of blue or violet color; suspected MRSA were of mauve color.
All suspicious isolates were frozen at −80°C in Microbank tubes (Pro-Lab Diagnostics, Bromborough, UK) until further assessment.
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