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Gene pulser 2 electroporator

Manufactured by Bio-Rad
Sourced in United States

The Gene Pulser II electroporator is a laboratory instrument used for the delivery of DNA, RNA, or other molecules into cells through the process of electroporation. It provides precise control over the electrical parameters to optimize the electroporation efficiency for a wide range of cell types and applications.

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49 protocols using gene pulser 2 electroporator

1

Immunoprecipitation and Western Blotting Assay

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Saos-2 and HEK293 cells were transfected with jetPRIME (Polyplus Transfection, Illkirch, France) according to the manufacturer’s instructions. BJAB cells were transfected by electroporation (220V, 950 μF) with Bio-Rad Gene Pulser II electroporator in 400 ul of serum-free medium. The cells were then transferred to complete RPMI 1640 media, which was preincubated to 37°C.
Immunoprecipitation (IP) and Western blotting were performed as described previously [41 (link)]. Briefly, cells were collected and were lysed in lysis buffer (10 mM Tris, 1% NP-40, 2 mM EDTA, 150 mM NaCl [pH 7.5]) with protease inhibitors. For IP, lysates were incubated with the antibodies indicated in the figures and 30 μl of a 1:1 mixture of protein A/G Sepharose beads at 4°C overnight. The beads were washed with RIPA buffer for 3 times, boiled and were subjected to SDS-PAGE for Western blotting.
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2

Electroporation of saRNA for IL-12 Production

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2 × 106 MC38 or BHK-21 cells were electroporated with ∼10 μg of in-vitro-transcribed SFV-IL-12 saRNA in 400 μL (MC38) or 800 μL (BHK-21) of PBS using 4-mm electroporation cuvettes and the Gene Pulser II electroporator (Bio-Rad, Hercules, CA). The electroporation parameters for MC38 cells (1 pulse of 500 V, 25 μF) were optimized using SFV-GFP saRNA, and parameters for BHK-21 cells (2 pulses of 850 V, 25 μF) have been described previously.59 Electroporated cells were cultured for 24 h at 37°C and 5% CO2, and then supernatants were collected to analyze IL-12 secretion. Quantification of IL-12 was performed by a commercial specific ELISA (BD Biosciences, Franklin Lakes, NJ). Western blot analysis was carried out using a rat antibody that recognizes the p40 subunit of mouse IL-12 (BD Biosciences). To verify IL-12 bioactivity, 106 mouse splenocytes/well were incubated in U-bottom 96-well plates with 10 ng of IL-12 in RPMI-1640 complete medium for 48 h at 37°C and 5% CO2. Then supernatants were collected, and IFN-γ secretion was quantified using a commercial specific ELISA (BD Biosciences).
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3

Paramecium Electroporation for Protein Delivery

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P. octaurelia culture prepared as above was resuspended in a fresh volume (100 mL) of MSS buffer for 60 min to prevent autofluorescence.12 After spinning down and another wash cell viability was examined under a binocular microscope. The buffer G in which recombinant proteins were eluted from the affinity gel was exchanged as follows: 0.5 mL of Sephadex G-25 was loaded on the Spin-X centrifuge tube filters (0.45 µm, Costar Corning) and rinsed fivefold with 0.3 mL of MSS buffer followed by 1 min spin (1000 x g). Recombinant protein solution (130 µL) was overlaid on the column and spun for 4 min. Purified recombinant protein in MSS (50 µg in 50 µL) was mixed with 250 µL of Paramecium suspension (64,000 cells) in a 0.4 mm gap cuvette and electroporation was performed in a Gene Pulser II Electroporator (Bio-Rad) at the settings: 60 V, 200 µF, 300 Ω. After electroporation cells were transferred into sterile Eppendorf tubes and gently mixed for 4 h at 27°C (i.e., under the cell cultivation conditions) and next processed for confocal imaging.
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4

Synthetic Infectious IBV Clone Construction

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Construction of an infectious IBV clone was done by the assembly of five cloned RT-PCR fragments from Vero-adapted IBV Beaudette strain, comprising of fragments A-E (Fang et al., 2007 (link)). Full-length transcripts were generated in vitro using the mMessage mMachine T7 kit (Ambion). The N transcripts were generated using a linearized pKT0-N containing IBV N gene and 3′-UTR as templates. The in vitro synthesized full-length and N transcripts were treated with DNase I and purified with phenol/chloroform. Vero cells were grown to 90% confluence, trypsinized, washed twice with PBS and resuspended in PBS. RNA transcripts were added to 400 μl of Vero cell suspension in an electroporation cuvette, and electroporated with one pulse at 450 V, 50 mF with a Bio-Rad Gene Pulser II electroporator. The transfected Vero cells were cultured overnight in 1% FBS containing DMEM in a 6 well plate and further cultured in DMEM without FBS.
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5

CENP-C Deletion Mutant Expression in DT40 Cells

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For expression of CENP-C deletion mutants in DT40 cells, Ecogpt gene or blasticidin S resistance cassette under control of the chicken β-actin promoter was inserted as selection marker. A Gene Pulser II electroporator (Bio-Rad, Tokyo, Japan) was used for all transfections into DT40 cells. All molecular biology experiments, including Southern and Western blot analyses, were followed by standard methods. All chicken DT40 cells were cultured at 38.5°C in DMEM supplemented with 10% fetal bovine serum, 1% chicken serum, β-mercaptoethanol, penicillin, and streptomycin.
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6

Generating CENP-A-GFP expressing DT40 cells

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To generate DT40 cells expressing GFP-CENP-A or GFP-CENP-AQD, ggCENP-A_pEGFP-C2 or ggCENP-AQD_pEGFP-C2 plasmids containing a Blasticidin resistance gene were transfected into CENP-A conditional knockout cells [CENP-A (–/Flox), Mer-Cre-Mer]22 (link) with a Gene Pulser II electroporator (Bio-Rad). Cells transfected with the ggCENP-A_pEGFP-C2 plasmid were selected in medium containing 2 mg/ml G418 (Santa Cruz Biotechnology), and cells transfected with the ggCENP-AQD_pEGFP-C2 plasmid were selected in medium containing 25 μg/ml Blasticidin S hydrochloride (Wako). After 10 days of selection, the drug resistant and GFP-positive clones were isolated. To knockout the endogenous CENP-A gene in the isolated clones, 100 nM 4-hydroxytamoxifen (OHT, Sigma) was added to the culture medium to activate the Mer-fused Cre-recombinase (Mer-Cre-Mer), and then the 5′ portion of the CENP-A gene [from exon 1 to 3 (CENP-A 1–87)] flanked by the LoxP sequences was excised from the genome. After the OHT treatment, we further isolated the monoclonal lines by limited dilution in 96-well plates, and verified the depletion of endogenous CENP-A in the isolated clones by a southern blot analysis. CENP-A disruption was also confirmed by an immunoblot analysis.
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7

Caged Luciferin Labeling and Doxorubicin Encapsulation in Extracellular Vesicles

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Five micrograms of EVs was incubated with 150 µM 1-(4,5-dimethoxy-2-nitrophenyl)ethyl ester (DMNPE)-caged-D-luciferin for 1 h, at 37°C, protected from light. Luciferin was released from the DMNPE group by UV-B (365 nm) photolysis (5 min, on ice) using an UV transilluminator (7 (link),21 (link)). Non-incorporated luciferin was removed using Exosome Spin Columns (Life Technologies). Luciferin-loaded EVs were added to 4T1luc2 seeded in 96-well plates, or injected i.t. into mice, followed by BLI. Ten micrograms of EVs was mixed with 100 µg of dox (DOXO-cell®) in PBS supplemented with 5 mM EDTA, and then the mixture was electroporated at 35 V and 150 µF using 0.4 cm cuvettes in a Gene Pulser II electroporator (Bio-Rad) (10 (link),21 (link)). Empty EVs were also electroporated. Non-incorporated dox was washed out with PBS by using ultracentrifugation (120,000 g, 70 min). Loaded dox was quantified by fluorescence detection in a Biotek Synergy HT microplate reader (emission, 594 nm; excitation, 480 nm) with Gen 5 software (BioTek). Fluorescence readings were compared with a standard curve of free dox. On average, yield of dox encapsulation was 10%.
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8

Agroinoculation of Infectious Clones

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Infectious clones were individually transformed into Agrobacterium tumefaciens C58 by using a GenePulser II electroporator (Bio‐Rad). Agroinoculation was conducted according to the procedure described by Llave et al. (2000) with some modifications. Briefly, 0.5 ml of an overnight bacterial culture was recultured in 10 ml of Luria Bertani (LB) medium (pH 5.6) containing kanamycin (50 μg/ml), streptomycin (50 μg/ml), 2‐N‐morpholino‐ethanesulfonic acid (MES, 10 mM), and acetosyringone (AS, 0.04 mM) at 28 °C for 16 hr on a shaker set at 200 rpm. The bacterial cells were pelleted by centrifugation at 5,000 × g for 10 min and resuspended in 10 ml of an infiltration solution (10 mM MgCl2, 0.15 mM AS, pH 5.6). Agrobacteria carrying the infectious DNA‐A or DNA‐B constructs were co‐injected in equal amounts into the leaves of N. benthamiana, oriental melon (C. melo “Silver Light”) or cucumber (C. sativus “Vantage”). After agroinoculation, N. benthamiana leaves with symptoms (c.1 g) were collected and ground in 0.01 M potassium phosphate buffer (pH 7) (1:20, wt/vol). The resultant sap was inoculated onto N. benthamiana leaves or cotyledon explants of oriental melon and cucumber plants by rubbing with carborundum powder. All inoculated plants were kept in a greenhouse at 25–28 °C to observe symptom development.
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9

Transfection and Selection of Recombinant P. falciparum

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Transfections were performed as described previously (46 (link)). Briefly, 150 μg of plasmid DNA was precipitated and resuspended in Cytomix (25 mM HEPES [pH 7.6], 120 mM KCl, 0.15 mM CaCl2, 2 mM EGTA, 5 mM MgCl2, 10 mM K2HPO4). A ring-stage P. falciparum culture was washed with Cytomix and resuspended in the DNA/Cytomix solution. Cells were electroporated using a Bio-Rad Gene Pulser II electroporator at 950 μF and 0.31 kV. Electroporated cells were washed with media and returned to normal culture conditions. Parasites expressing the construct were selected by continuous treatment with 2 μg/ml blasticidin S HCl (Thermo Fisher Scientific). Transfectants were cloned by limiting dilution, and diagnostic PCRs were performed using genomic DNA from resultant transfectants using primer sets specific for episomal plasmids or genome integrants. Primer A and D sequences are as follows: (X) 5′-TAAGAACATATTTATTAAACTGCAG-3′; (Y) 5′-GAAAAACGAACATTAAGCTGCCATA-3′.
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10

Optimized Cell Electroporation Protocol

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After trypsinization, 5 × 106 cells of each HaloTag stain or fluorescent protein were mixed, pelleted at 250g, and resuspended in 180 μl medium before being transferred to an electroporation cuvette (Bio-Rad, Hercules, CA, USA). Cells were repelleted, then electroporated using 220 V/900 μF in a Gene Pulser II electroporator (Bio-Rad). The cuvette was left to incubate at 37°C for 30 min; the cells were then resuspended and plated. Plates were fixed at appropriate time points using 4% v/v formaldehyde.
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