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66 protocols using mimics 19

1

Mandibulectomy Defect Reconstruction Protocols

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The DICOM format data of head and bilateral ilium were imported into Mimics 19.0 software (Materialise, Belgium) to simulate the mandibulectomy and defect reconstruction [7 (link)]. Then the Stl type data was imported into Geomagic studio 2013 to draw the templates.
In the cutting template, the complicated guiding template adopted an integrated design, with special design considerations such as mental foramen for accurate attachment, locating hole for repositioning, and saw path reserved for saw loss. These were different from the design of the simple template for cross-sectional guidance. In template for graft bone harvest, the complicated template was added with an in-situ shaping template. In template for reconstruction, the simple template used a prebent titanium plate or similar splint for restoration, while the complicated template was a detachable reconstructive template, able to load the titanium plate. In addition, it also integrated the locating hole consistent with the cutting template for rapid repositioning of residual bone segments.
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3D Printing Accuracy Evaluation of Tibial Bone

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After the error model and the kinematic model of the robot were established (Figs. S1A, Table S2), the in vitro in situ 3D printing tests before and after error compensation were performed on the isolated tibia. The printing accuracy was measured with the Geomagic Control software (Geomagic, USA) according to a previous study [14] (link). Briefly, the healthy isolated tibia was scanned with a GE Lightspeed 16 CT instrument (slice distance, 0.625 mm; field of view [FOV], 500 mm). The generated images underwent conversion into DICOM files for 3D reconstruction with the MIMICS 19.0 software (Materialise, Leuven, Belgium). After the defect was created and the in situ 3D printing process was completed, bone scanning was performed with a 3D handheld scanner (EinScan-Pro, Shining 3D, China). The high-definition mode was selected for scanning. The digital models were imported into the Geomagic Control software, and a 3D Comparison operation was performed in the software to measure printing accuracy.
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3D Reconstruction of Pelvic Organs from Cadaver Specimens

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The pelvic organs were obtained from 26 adult male cadavers, 50–85 yr of age (mean: 66.1 yr). The cadavers were donated to Tianjin Medical University for research and education in accordance with their consent, and their use in research was approved by the Ethics Committee of Tianjin Medical University. The written informed consent was obtained from all the participants in their lifetime.
The entire intrapelvic organs were embedded in celloidin. The embedded blocks were cut into successive slices by an immersing-alcohol microtome (L-type; R. Jung AG, Heidelberg, Germany). The detailed procedures have been described in our previous articles [9 (link), 10 (link)]. Slices were examined with microscopy (SZX7; Olympus, Tokyo, Japan) and were read by 2 blinded readers.
Pelvic structures were outlined manually for all sections and reconstructed in 3D using Mimics 19.0 software (Materialise Inc., Belgium). The complete 3D reconstruction was performed in three adult specimens.
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Micro-CT Imaging of Tibial Bone Scaffold

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The tibia bones were harvested and scanned using a M1001 micro–computed tomography (CT) system (Hiscan Information Technology, Jiangsu, PRC) at 90 kV, 89 μA, a field of view of 63.9 mm and a nominal isotropic image voxel size of 62.4 μm. The obtained images were converted to Digital Imaging and Communications in Medicine (DICOM) files for the following analysis. The 3D reconstruction of the scaffold and newborn bone were operated using MIMICS 19.0 software (Materialise, Leuven, Belgium). To avoid the impact of metal artefact, we used high voltage and the same threshold value to segment the titanium and bone tissue.
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5

3D Modeling of Anterior Teeth and Bone from CBCT

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Digital Imaging and Communication in Medicine (DICOM) files were imported into Mimics 19.0 software (Materialise, Leuven, Belgium). In Mimics, 3D digital models of the anterior teeth and bone in vivo were reconstructed. In Mimics, the CBCT images had predefined thresholds that were set to correspond to the tooth or bone density as follows: tooth, 1,200–3,071 segments and bone, 226–3,071 segments. The threshold level was set to most clearly show the tooth anatomy with minimal interference from the surrounding bone and adjacent structures. On each CBCT slice, manual refinement was performed through a 2D slice-by-slice procedure to enhance accuracy by correcting for over- and under-contoured voxels in the tooth volume20 (link) (Figure 1).
The digital models were exported in stereolithographic (STL) format and imported into Geomagic software (Geomagic, Cary, NC, USA). For more realistic digitalization of the metal brackets bonded to the teeth, a digital model derived from the intraoral scan was superimposed over the 3D model generated from the CBCT datasets (Figure 2).
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3D Reconstruction of Knee Joint Structures

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A 35-year-old male volunteer without any symptoms of osteoarthritis or meniscal tears was scanned by a 3 T magnetic resonance (MR) scanner (uMR 770; United Imaging Co., Ltd., Shanghai, China) and a GE Lightspeed 16-slice computed tomography (CT) scanner (GE Healthcare, Chicago, IL, USA). During the scanning, the volunteer kept the supine position with a maker on the lower limb to fit the coordination of the two scanning systems. For the MR imaging (MRI), the extended echo train sequence was performed with a slice thickness of 1.5 mm and a field of view (FOV) of 152 mm. For the CT scanning, the slice thickness was 0.625 mm, and the FOV was 500 mm.
The images saved in digital imaging and communications in medicine (DICOM) format were imported into the MIMICS 19.0 software (Materialise, Leuven, Belgium) to complete the 3D reconstruction. The bone objectives were reconstructed using the segmentation of bone structures from CT images, and the cartilage, meniscus, and ligaments were manually segmented from the MR images under the supervision of an experienced radiologist and an experienced orthopedist.
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3D Bilateral Lung Reconstruction from DICOM CT Scans

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CT scan data in DICOM format were imported into a commercial software programme (Mimics 19.0 software®, Materialise Inc., Leuven, Belgium). 3D bilateral lung image reconstructions were performed, and all images were reviewed using this software. The lungs were segmented semi-automatically with Hounsfield unit (HU) thresholds from −1 000 to 0 HU (Figure 1). In order to measure accurately, the tracheal and main bronchial areas were removed from the images. The segmented image was called the “mask”, a volume of interest including an entire lung. Based on the contiguous sections of CT imaging, lung 3D model was calculated from the mask. The image reconstruction was performed by a single operator.
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Normal Pelvic CT Anatomy Database

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Pelvic X-ray CT data of patients admitted to our hospital for reasons other than fracture between January and June of 2017 were selected. The pelvic structures of the included participants were normal. The 80 adult cases identified included 40 males and 40 females with an average age of 51.65±12.46 years and an age range of 21 to 83 years. None of the patients had anatomical abnormalities or diseases such as pelvic tumors, fracture, malformation, or severe osteoporosis. The included patients had normal pelvic structures and good bone density. The pelvic CT data were saved in digital image and communications in medicine (DICOM) format. The CT scanning parameters were as follows: a 512×512 matrix, 100-140 kV voltage, 360 mA current, 1-mm interslice interval, and 1-1.5 mm slice thickness (SOMATOM Definition Flash, SIEMENS Ltd., USA). The 3D reconstructions using the CT data, screw insertion simulation, and parameter measurements were performed using Mimics 19.0 software (Materialise, Belgium). The hospital ethics committee approved this study under ethical clearance number 2018-102.
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9

Design Process of 3D Printed Prosthesis

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The design process of a 3D printed prosthesis is displayed in Figure 1. First, the computed tomography (CT) scan data of bilateral limbs were acquired and reconstructed using Mimics 19.0 software (Materialise, Belgium). Second, the healthy bone was mirrored to the disease-affected side, and the defect regions overlapped one another (automatically and manually). Third, the bone defect model obtained from Mimics was imported into Geomagic Studio 12 software (Geomagic, United States) for modification, after which personal prostheses with various shapes were designed according to specific defects and doctor’s requests. Fourth, the prosthesis insertion and fixation procedures were simulated via medical interaction platform; size, matching degree, and screw position was further evaluated. Any design that could not meet the surgical requirements was redesigned or modified and locally optimized.
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10

3D Reconstruction and Analysis of Lower Urinary Tract

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Patients underwent T2-weighted MRI using a 3-Tesla magnet coil with a slice thickness of 3 mm. The first step, the collected MRI data from patients were imported into Mimics 19.0 software (Materialize, Leuven, Belgium) in DICOM file for 3D reconstruction of prostate, central gland, peripheral zone, intravesical prostatic protrusion, prostatic urethra and bladder based on horizontal, sagittal and coronal of pelvic T2-weighted MRI. To achieve accurate reconstruction of the lower urinary tract anatomy, this study applies corresponding 3D model-based registration for creation of fusion 3D model on account of each horizontal, sagittal and coronal plane. The Second step, the corresponding 3D models were fitted precisely in Geomagic Studio 14.0 software (Geomagic, Rock Hill, SC, USA) based on the same coordinate system. At the same time, the results of parameters related to 2D plane were measured. Finally, 3D measurement and analysis of related parameters were performed in 3-matic software (Materialize, Leuven, Belgium).
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