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Si gel 60

Manufactured by Merck Group
Sourced in Germany, United States

Si gel 60 is a chromatographic material composed of silica gel, a porous form of silicon dioxide. It is commonly used as a stationary phase in column chromatography and thin-layer chromatography (TLC) for the separation and purification of organic compounds. Si gel 60 provides a high surface area and controlled pore size distribution, making it suitable for a wide range of applications in analytical and preparative chromatography.

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12 protocols using si gel 60

1

Characterization of Organic Compounds

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Melting point was determined on a Bock monoscope and was uncorrected. Optical rotation was measured on an ADP410 Polarimeter (Bellingham + Stanley Ltd., Tunbridge Wells, Kent, UK). 1H and 13C NMR spectra were recorded at ambient temperature on a JEOL JNM-a 400 instrument (JEOL Ltd., Tokyo, Japan), operating at 400 and 100 MHz, respectively, and chemical shifts were given in δ (ppm), using residual solvent peaks (DMSO-d6) as references. FABMS data were obtained by using a JEOL JMS 700 mass spectrometer (JEOL Ltd., Tokyo, Japan) and m-nitrobenzyl alcohol matrix (Sigma-Aldrich, St. Louis, MO, USA). A Merck (Darmstadt, Germany) silica gel GF254 was used for preparative TLC, and a Merck Si gel 60 (0.2–0.5 mm) was used for column chromatography.
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2

Isolation and Extraction of Bioactive Cyanobacterial Compounds

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Initial screening assays led to the selection of two cyanobacterial strains, Cyanobium sp. LEGE 07175 and Nodosilinea sp. LEGE 06001 isolated from the Portuguese coast [11 (link)] and maintained in the LEGEcc in CIIMAR, Matosinhos, Portugal. Strains were cultured in Z8 medium supplemented with marine tropical salt (25 g/L), at 25 °C, with a photoperiod of 14 h/10 h light and dark, respectively, and at a light intensity of 10–30 μmol photons∙m−2∙s−1. Cyanobium sp. LEGE 07175 cultures were grown in 20-L flasks with constant aeration and, at the exponential phase, cells were harvested through centrifugation, before being frozen and freeze-dried. For the Nodosilinea sp. LEGE 06001 strain, available freeze-dried biomass was used, which followed the same growth conditions. The biomass of LEGE 07175 (13 g) and LEGE 06001 (56.5 g) was extracted by repeated percolation with a warm mixture of CH2Cl2/MeOH (2:1, v/v), yielding a crude extract of 1.9 g and 8.74 g, respectively. Both crude extracts were fractionated by normal-phase (Si gel 60, 0.015–0.040 mm, Merck KGaA, Darmstadt, Germany) VLC (vacuum liquid chromatography) with an increasing polarity grade, from 90% n-hex to 100% EtOAc and 100% MeOH [12 (link)], giving a total of nine fractions each.
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3

Isolation and Characterization of Gedunin from Neem Bark

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The ground bark of Azadirachta indica A. Juss. (2 kg) was percolated for 24 h with refluxing 70% MeOH. The MeOH was evaporated in a rotary evaporator and diluted with H2O. The removal of lipophilic impurities was accomplished by repeated distribution between 2 L petroleum ether. The remaining aqueous extract was lyophilized. The lyophilizate was mixed with Si gel 60 (63-230 Merck) and chromatographed on a Si gel column. The column was eluted first with a petroleum ether–ethyl acetate solvent system. The fractions were eluted with petroleum ether–ethyl acetate (70:30) followed by a (60:40) solvent system, which was eventually pooled and concentrated to give 4.2 g of the fraction. This fraction was again subjected to small Si gel 60 column chromatography to isolate 2.0 g gedunin in a petroleum ether–ethyl acetate (65:35) solvent system. The purity of gedunin was monitored by TLC (Kieselgel60, F245, Merck) using petroleum ether–ethyl acetate (60:40) as a developing solvent system. The separation was monitored by TLC (Kieselgel60, F245, Merck) with petroleum ether/EtOAc. Gedunin was crystallized from MeOH, mp 220°, [α]20D -44 (CHCI3). The full chemical characterization by modern spectroscopic techniques is available [34 (link)].
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4

Antioxidant and α-Amylase Inhibition Study

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All solvents and chemicals used in the study were analytical grade. Ultraviolet (UV) absorbance for determining antioxidant was observed using Genesys UV-Vis Spectrophotometer and microplate reader. TLC analysis on precoated Si-gel plates (Merck Kieselgel 60 F254, 0.25 mm) and detected by UV light (254 nm) and by CeSO4 spraying reagent. Vacuum liquid chromatography (VLC) was carried out using Merck Si-gel 60. Methanol, sucrose, saline water, and dimethyl sulfoxide (DMSO) from Merck. Rat intestinal acetone powder, glucose kit, NaOH, acarbose, HCl, phosphate buffer (pH 6.9), and porcine pancreas α-amylase enzyme from Sigma Company.
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5

Spectroscopic Characterization of Chemical Compounds

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UV spectra measurements were obtained with a Shimadzu UV-1650PC spectrophotometer; IR spectra were determined with a Shimadzu Infrared-400 spectrophotometer (Shimadzu, Kyoto, Japan). The 1H and 13C-NMR measurements were carried out on Bruker Avance DRX-850 MHz (for 1H) and 212.5 MHz (for 13C) (Bruker BioSpin, Billerica, MA, USA) in CDCl3 solution, and chemical shifts were expressed in δ (ppm) with reference to TMS, and coupling constant (J.) in Hertz. ESIMS was carried out on Advion compact mass spectrometer (CMS, Ithaca, NY, USA). EIMS was carried on Scan EIMS-TIC, VG-ZAB-HF, X-mass (158.64, 800.00) mass spectrometer (VG Analytical, Inc. Manchester, UK). Open column chromatography was performed on normal-phase Si gel (Si gel 60, Merck, Darmstadt, Germany). Normal-phase and reversed-phase (SPE-C18) cartridges (Strata columns) was used for solid phase extraction. TLC was carried out on precoated silica gel 60 F254 (Merck, Darmstadt, Germany) plates. Developed chromatograms were visualized by spraying with 1% vanillin-H2SO4, followed by heating at 100 for 5 min.
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6

NMR Spectroscopy and Chromatography Techniques

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1H and 13C NMR spectra were collected using a JEOL JNM ECP-400 spectrometer (Tokyo, Japan) at 600, 500, and 400 MHz for 1H NMR and 150, 125, and 100 MHz for 13C NMR in deuterated solvent (methanol-d4 (CD3OD), dimethyl-sulfoxide-d6 (CD3)2SO), and pyridine-d5 (C5D5N)). Column chromatography was carried out using Sephadex LH-20 (20–100 µM, Sigma, St. Louis, MO, USA), silica (Si) gel 60 (70–230 mesh, Merck, Darmstadt, Germany), and Lichroprep® RP-18 (40–63 µm, Merck, Darmstadt, Germany). Thin-layer chromatography (TLC) was conducted on pre-coated Merck Kieselgel 60 F254 plates (20 × 20 cm, 0.25 mm, Merck) and RP-18 F254S plates (5 × 10 cm, Merck) using 10% H2SO4 (sulfuric acid dissolved in methanol) as a spray reagent. All the solvents used for column chromatography were of reagent grade and obtained from commercial sources.
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7

Isolation of Portoamides A and B

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To obtain a mixture of portoamides A and B in the proportions found inside PHO cells, we carried out a slightly modified version of a previously reported isolation (Leão et al., 2010 (link)). Briefly, biomass from exponentially growing cultures of PHO was harvested by centrifugation, lyophilized and repeatedly extracted with a warm (<40°C) mixture of CH2Cl2/MeOH (2:1). The vacuum liquid chromatography (VLC) fractionation of this crude extract was performed on a normal phase (Si gel 60, 0.015–0.040 mm, Merck KGaA) column with an elution gradient of increasing polarity, from 3:2 EtOAc/n-hexane to EtOAc to MeOH. The fraction eluting with 100% MeOH contained the portoamides (from HPLC analysis) and was further fractionated by analytical-scale HPLC. A gradient from 50% MeOH (aq.) to 100% MeOH (1 mL min-1) was used for both the analysis and isolation of the portoamides A and B, whose mixture eluted and was collected between tR = 13.0–15.0 min over multiple runs. The purity of the portoamide mixture was confirmed by 1H NMR, namely by integration and comparison with previously reported portoamides spectral data (Leão et al., 2010 (link)); the proportion of the mixture was found to be 2.7:1 on the basis of integration of LC-HRESIMS peaks for each compound (Figure 1).
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8

Isolation of Oleacein from Olive Oil

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Oleacein was isolated from appropriately selected olive oil after screening by NMR of 500 samples collected from Greece the harvest season 2015–2016. The selected oil contained the highest amount of oleacein among the studied samples. Olive oil from Olea europaea cv Koroneiki (500 g) from northern Peloponnese, Greece, was mixed with cyclohexane (2 L) and extracted with acetonitrile (2.5 L). The acetonitrile phase was collected and evaporated using a rotary evaporator under reduced pressure. The residue was submitted to column chromatography using Si gel 60 Merck (40–63 μm) as stationary phase and mobile phase, as shown in Table 1:
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9

Spectroscopic Characterization of Compounds

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The melting points were determined on a Stuart Melting Point Apparatus SMP3 (Bibby Sterilin, Stone, Staffordshire, UK) and are uncorrected. Optical rotations were measured on an ADP410 Polarimeter (Bellingham + Stanley Ltd., Tunbridge Wells, Kent, UK). The 1H and 13C NMR spectra were recorded at ambient temperature on a Bruker AMC instrument (Bruker Biosciences Corporation, Billerica, MA, USA) operating at 300 and 75 MHz, respectively. High-resolution mass spectra were measured with a Waters Xevo QToF mass spectrometer (Waters Corporations, Milford, MA, USA) coupled to a Waters Aquity UPLC system. A Merck (Darmstadt, Germany) silica gel GF254 was used for preparative TLC, and Merck Si gel 60 (0.2–0.5 mm) was used for column chromatography. LiChroprep silica gel and Sephadex LH 20 were used for column chromatography.
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10

Characterization of Natural Compounds

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The specific rotations were operated on a JASCO DIP-370 digital polarimeter. The 1H- and 13C-NMR spectra were recorded in methanol-d4 and chloroform-d on a JEOL JNM ECP-400 spectrometer (Tokyo, Japan) at 400 MHz and 100 MHz, respectively. The infrared (IR) spectra were measured on a Mattson Polaris FT/IR-300E spectrophotometer. Mass spectra were recorded using a Quattro II mass spectrometer. Column chromatography was conducted using Diaion HP-20, Sephadex LH-20 (20–100 µM, Sigma, St. Louis, MO, USA), silica (Si) gel 60 (70–230 mesh, Merck, Darmstadt, Germany), and LiChroprep RP-18 (40–63 µM, Merck). All TLC was performed on precoated Merck Kiesel gel 60 F254 plates (20 × 20 cm, 0.25 mm) and RP-18 F254S plates (5 × 10 cm, Merck). The spray reagent was 25% H2SO4.
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