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8 protocols using anti bad

1

Silymarin-Based Hepatoprotective Assay

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Silymarin, TAA, BSA, Bradford reagent, anti-Bcl-2, anti- Bcl-xL, anti-Bad, and anti-Bax antibodies were purchased from Abcam (UK). Other antibodies were purchased from Sigma-Aldrich Chemical Company (St. Louis, MO, USA). Kits for measurement of blood glucose and LDH were purchased from Span Diagnostic Ltd., India. All other chemicals were bought from Sisco Research Laboratory, India.
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2

Protein Expression Analysis after Drug Treatment

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The cells were collected after drug intervention. Whole cell lysates were obtained by gentle lysis (Cat. No. KGP250, KeyGEN). Protein quantitation was performed by the BCA method (Cat. No. KGPBCA, KeyGEN). The protein was separated by SDS-PAGE, and the protein was transferred to PVDF membranes by wet-transfer method. Thereafter, the membrane was incubated with 50 mL/L skim milk powder at room temperature for 1 h. Later on, the membranes were incubated with the primary antibodies, including anti-MRPL35 (Cat. No. YT5669, Immunoway; 1:2000), anti-TP53 (Cat. No. YM3052, Immunoway; 1:2000), anti-BCL2L1 (Cat. No. YT0477, Immunoway; 1:2000), anti-BAX (Cat. No. YM3619, Immunoway; 1:500), anti-COPS5 (Cat. No. ab124720, Abcam; 1:2000), anti-BAD (Cat. No. 9292, Cell Signaling Technology; 1:1000), and anti-β-tubulin (Cat. No. YM3030, Immunoway; 1:10000). Then, the membranes were washed with TBST and incubated with anti-mouse/rabbit IgG antibody (Cat. No. S001 S004, TDYBio; 1:10000) at 37 ℃ for 1 h. After washing, the proteins were detected with an ECL detection system. ImageJ software was used to measure the band intensity.
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3

Curcumin Modulation of Apoptosis Markers

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Curcumin, STZ, BSA, Bradford reagent, anti-Bcl-2, anti- Bcl-XL, anti-Bad and anti-Bax antibodies were purchased from Abcam (UK). Other antibodies like anti-ERK, anti-p53, etc. were purchased from Sigma–Aldrich Chemical Company (St. Louis, MO, USA). Kits for measurement of blood glucose and LDH were purchased from Span Diagnostic Ltd., India. All other chemicals were bought from Sisco Research Laboratory, India.
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4

Western Blot Analysis of Signaling Proteins

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Cell lysates were prepared in a lysate buffer [20 mM Tris (pH 7.4), 150 mM NaCl, 1 mM ethylenediaminetetraacetic acid (EDTA), 1 mM EGTA, 1% Triton X-100, 25 mM sodium pyrophosphate, 1 mM NaF, 1 mM β-glycerophosphate, 0.1 mM sodium orthovanadate, 1 mM phenylmethylsulfonyl fluoride (PMSF), 2 µg/ml leupeptin and 10 µg/ml aprotinin]. A total 50 µg of cell lysate protein was separated on sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) gel and transferred onto Hybond ECL nitrocellulose membranes (Amersham), followed by blocking with 5% skimmed milk at room temperature for 1 h. Primary antibodies were added overnight at 4oC with agitation, followed by incubation with secondary antibodies for 1 hour at room temperature. Signals were subsequently developed (ECL Western Blotting Kit, Amersham). Primary antibodies used were: anti-FAM84B 1:2000 (Proteintech), anti-phospho-AKT (serine 473; Signaling Technology, 9271S, 1:500), anti-AKT (Santa Cruz Biotechnology, sc-1618, 1:1000), anti-BAD (Abcam, ab32445, 1:2000), anti-FLAG (Sigma Aldrich, F3165, 1:1000), anti-actin (Santa Cruz Biotechnology, sc-1615, 1:1000), and anti-tubulin 1:1000 (Santa Cruz).
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5

Protein Expression Analysis Protocol

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Tissues and cells were lysed in radioimmunoprecipitation assay buffer (Beyotime, Shanghai, China). The protein contents were determined by a BCA protein detection kit (Beyotime, Shanghai, China). The proteins were separated by electrophoresis on sodium dodecyl sulfate–polyacrylamide (SDS PAGE) gels and transferred to a polyvinylidene difluoride (PVDF) membrane. The membranes were blocked with 5% skim milk for 2 h at room temperature, and then probed with the indicated primary antibodies overnight at 4 °C with gentle shaking. After washing with phosphate buffered saline with Tween 20 (PBST), the membrane was developed with a secondary antibody (HRP-conjugated goat anti-rabbit IgG; ab205718) for 1 h at room temperature. Subsequently, membranes were visualized using a chemiluminescence imaging system (Biolight, Guangzhou, Guangdong, China) according to the manufacturer’s protocol. The primary antibodies used were anti-CycA (ab185619, 1:1000), anti-CycD1 (ab16663, 1:100), anti-EDN1 (ab2786, 1:1000), anti-PI3K (ab278545, 1:1000), anti-CLDN1 (ab180158, 1:2000), anti-CLDN2 (ab53032, 1:500), anti-Caspase-3 (ab184787, 1:2000), anti-Bcl-2 (ab182858, 1:2000), anti-Bax (ab32503, 1:1000), anti-Bad (ab32445, 1:1000), anti-GAPDH (ab8245, 1:500) from Abcam (Cambridge, MA, USA).
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6

Immunofluorescence and Mitochondrial ROS Detection

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The procedures were performed as previously mentioned33 and the samples were incubated with the primary antibodies mentioned blow: anti‐NeuN (1:1000, Cell Signaling Technology), anti‐Bad (1:500, Abcam) and anti‐Tuj 1 (1:1000, Neuromics). Then, on the following day, we treated the samples with secondary antibody (1:1000, Invitrogen) along with DAPI (1:800, Invitrogen).
To detect mitochondrial ROS levels, we used Mito‐SOX Red staining (Life Technologies) on the basis of the manufacturer's instructions. And we took advantage of the TUNEL assay (Invitrogen) to detect apoptosis.
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7

Western Blot Analysis of Apoptosis Markers

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Total protein was extracted from whole cells. The samples were heated at 90 °C for 10 min with the 1× sample buffer and separated by SDS-PAGE. Subsequently, the sample was electroblotted onto a polyvinylidene difluoride (PVDF) membrane (Millipore, Billerica, MA, USA). The membranes were probed with polyclonal rabbit antibodies against anti-Bcl-2, anti-Bax, anti-cleaved-caspase-3, anti-OTUD7B, anti-TNIP2, and anti-BAD (Abcam, Cambridge, MA, USA). For loading control, the membranes were stripped and re-probed with anti-alpha-Tubulin (Abcam).
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8

Immunofluorescence Quantification of Cell Cycle Markers

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A549 or H4 cells were fixed in 4% paraformaldehyde immediately after treatment and then blocked with 10% normal donkey serum (Sigma-Aldrich) for 1 h, followed by overnight incubation at 4°C in primary antibodies: mouse anti-Ki-67 (Dako, United Kingdom); anticyclin A; anticyclin D; anticyclin E; antiBcl-2; antiBcl-xL; antiBad; antimammalian target of rapamycin (Abcam, United Kingdom); rabbit anticleaved caspase 3, 8, or 9; anti-α 2 -adrenoceptor; or antibenzodiazepine receptor (Abcam). Cells were washed with phosphate-buffered saline and then incubated in fluorescein isothiocyanate or rhodamine-conjugated secondary antibody (Merck Millipore, United Kingdom). Cells were counterstained and mounted with nuclear dye 4′, 6-diamidino-2-phenylindole-mounting medium (Vector Laboratories, USA). Images were captured under an Olympus BX4 microscope (United Kingdom). Fluorescent intensity was quantified with the mean pixel intensity of relevant antibody staining by ImageJ software (National Institutes of Health, USA). Ten representative regions per section were randomly selected by an assessor blinded to the treatment groups. Intensity values were calculated and expressed as relative to control.
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