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13 protocols using gapdh

1

Western Blot Analysis of Protein Expression

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Proteins from lysed cells were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to nitrocellulose membranes (Bio-Rad, Hercules, CA, USA). Nonspecific binding sites were blocked with 5 % BSA in TBST for 60 min at room temperature. Blots were incubated with BCORL1 (PA5-24333, Thermo Fisher Scientific Pierce, Waltham, MA, USA), E-cadherin (24E10, #3195; Cell Signaling, Beverly, MA, USA) or GAPDH (G8140; US Biological, Swampscott, MA, USA) antibodies overnight at 4 °C. The membranes were then incubated with horseradish peroxidase (HRP)-conjugated sheep anti-mouse or donkey anti-rabbit secondary antibodies (Bio-Rad, Hercules, CA, USA) diluted at 1:10000, and detected using the Western Blotting Luminol Reagent (sc-2048, Santa Cruz, CA, USA) [15 ].
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2

Immunoblotting Assay for Fibulin-5, MMP-7, and GAPDH

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Fibulin-5 (R&D system, Minneapolis, MN, USA) and MMP-7 (EMD BioSciences, San Diego, CA, USA) and GAPDH (G8140, US Biological, Salem, MA, USA) antibodies were used for immunoblotting assay as previously described [17 (link)].
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3

Western Blot Analysis of Cell Proteins

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Cell proteins were collected with RIPA lysis buffer (Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), and 40ug protein were subjected to 4-20% SDS gel electrophoresis (Sigma) and were then transferred to PVDF membranes (Roche, Indianapolis, IN, USA). Then, 5% milk blocked membranes were incubated with S100A4 (1:1000, Abcam, Cambridge, UK), E-cadherin (1:500, Abcam) or Vimentin (1:1000, Abcam) antibody and subsequently incubated with matched secondary antibodies (Cell signaling, Danvers, MA, USA). Then, signals for each protein expression were detected with the Bio-Rad Gel imaging system (Bio-Rad, Hercules, CA, USA). GAPDH (G8140, US Biological, Swampscott, MA, USA) was used as a loading control.
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4

Western Blot Analysis of Cell Signaling

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Antibodies for western blot analysis were as follows: MACC1 (Abcam, Cambridge, MA, USA), Met (Cell Signaling Technology, Danvers, MA, USA), AKT (Cell Signaling), p‐AKT (Ser473) (Cell Signaling), E‐cadherin (Abcam), N‐cadherin (Abcam), vimentin (Abcam) and GAPDH (G8140, US Biological, Swampscott, MA, USA). The goat anti‐rabbit/mouse secondary antibodies were obtained from Cell Signaling. Two days post‐transfection, total proteins were extracted, followed by quantification with a Pierce BCA protein assay kit (Pierce, Bonn, Germany). Proteins were separated by 10% SDS‐PAGE gels and transferred to poly(vinylidene difluoride) membranes. After blocking, blots were probed with specific antibodies.
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5

Immunoblotting Analysis of Epithelial-Mesenchymal Transition Markers

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Total protein was isolated from cells in RIPA lysis buffer on ice. Protein concentration was quantified using a Brad-ford Protein Assay kit (Bio-Rad Laboratories, Hercules, CA, USA). Proteins were boiled before being separated by electrophoresis on sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) gels and transferred onto nitrocellulose membranes (Pall Corp, Port Washington, NY, USA). The following primary antibodies were used in the immunoblotting assays: SNAI1 (ab117866; Abcam), E-cadherin (24E10, number 3195; Cell Signaling, Beverly, MA, USA), vimentin (C-20, sc-7557; Santa Cruz Biotechnology Inc, Dallas, USA, USA), and GAPDH (G8140; US Biological, Swampscott, MA, USA). Horseradish peroxidase–conjugated secondary antibodies (Bio-Rad Laboratories) were used at a 1:1000–1:5000 dilution and detected using Western Blotting Luminol Reagent (sc-2048; Santa Cruz Biotechnology Inc), as described in our previous study.20 (link)
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6

Immunoblotting Assay Protocol

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The following primary antibodies were used in the immunoblotting assays: FOXA1 (#3333, Epitomics Inc., Burlingame, CA, USA) and GAPDH (G8140; United States Biological, Salem, MA, USA). Horseradish peroxidase-conjugated secondary antibodies (Bio-Rad, Hercules, CA, USA) were used at a 1:1,000–1:5,000 dilution and detected using a Western Blotting Luminol Reagent (sc-2048; Santa Cruz Biotechnology Inc., Dallas, TX, USA), as described in previous study.14 (link) Western blot results were analyzed using ImageJ software (National Institutes of Health, Bethesda, MD, USA).
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7

Western Blot Analysis of Protein Expression

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The whole proteins were lysed in RIPA buffer supplemented with protease and phosphatase inhibitors (Roche) and the concentrations were quantified with BCA Protein Assay Kit (Tiangen, Beijing, China), and an equal amount of 40 μg protein was separated by 10% SDS-PAGE gel and then transferred onto PVDF membranes (Millipore, Billerica, MA, USA). The membranes were blocked with 5% nonfat milk in TBST for 2 h at room temperature and incubated overnight with specific primary antibodies at 4 °C. Then the membranes were washed three times by TBST and incubated with HRP-conjugated secondary antibody for 2 h at room temperature (ZSGB-BIO, China). Detection was performed by enhanced chemiluminescence kit (Amersham, Little Chalfont, UK). GAPDH (G8140; US Biological, Swampscott, MA, USA) was used as protein loading control. The SRPK1 primary antibody was obtained from Abcam (Cambridge, MA, USA). The antibodies against E-cadherin, N-cadherin, Vimentin, AKT, p-AKT, ZO-1, ZEB1, Slug, Snail, Twist, ERBB2, CCND1 and MCM2 were purchased from Cell Signaling Technology (Beverly, MA, USA).
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8

Immunoblotting Assay Antibody Protocol

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The primary antibodies used in the immunoblotting assays were: SNAI1 (ab117866; Abcam) and GAPDH (G8140; United States Biological, Swampscott, MA, USA). Horseradish peroxidase-conjugated secondary antibody (Bio-Rad, Hercules, CA, USA) was used at a 1:1,000–1:5,000 dilution and detected using a Western Blotting Luminol Reagent (sc-2048; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), as described in a previous study (22 (link)).
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9

Quantification of MMP7 Protein

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Two days post transfection, total protein was extracted, following by quantification with BCA protein assay kit (Pierce, Bonn, Germany). Protein were separated by 10% SDS-polyacrylamide gels and subsequently transferred to PVDF membranes. Then, 5% milk blocked membranes were incubated with MMP7 (10374–2-AP, Proteintech, Rosemont, IL, USA) antibody. The secondary antibodies were obtained from Cell signaling (Danvers, MA, USA). GAPDH (G8140, US Biological, Swampscott, MA, USA) was used as a loading control.
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10

Comprehensive Antibody Validation Protocol

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Antibodies to STAT6 (D3H4, Cell Signaling technology), p-STAT6 (Tyr-641, Cell Signaling Technology), FLAG (M2, Sigma), p53 (Do-1, Santa cruz), PARP1 (F2, Santa cruz), Caspase-3 (H-277, Santa cruz), TRIML2 (ARP55636-P050, Aviva System Biology), EBV ZEBRA (sc-53904, Santa cruz), ICP0 (11060, Santa cruz), Ub-K48 (05–1307, EMD Millipore),Ub-K63 (05–1308, EMD Millipore), LC3B (GT3612,GeneTex) and GAPDH (G8140-01, US Biological) were used according to the manufacturers specifications. The monoclonal antibody anti-myc (9E10) and HA (12CA5) were prepared from hybridoma cultures. Mouse monoclonal antibodies against RTA were kindly provided by Ke Lan from Shanghai Pasteur Institute of CAS. Antibodies against IE1/2 were kindly provided by Zhikang Qian from Shanghai Pasteur Institute of CAS. Tetradecanoyl Phorbol Acetate (TPA) was purchased from Sigma and sodium butyrate from J&K Corporation. Proteasome inhibitor MG132 was purchased from Biomol International. 3-Methyladenine (3-MA), Choloquine (Chl), Cyclohexamide (CHX) and Hygromycin B were purchased from Sigma–Aldrich. Doxycycline (DOX) was purchased from Sangon Biotech (Shanghai). PMSF, Leupeptin, Aprotinin, Pepstatin A and Puromycin were purchased from Amresco, and G418 from Inalco S.p.A.
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