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12 protocols using cy3 conjugated affinipure goat anti rabbit igg h l

1

Cellular Attachment and Cytoskeleton Analysis

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Cells were cultured with OCP particles at a density of 2.5 × 104 cells/cm2. After cultured for 24 h, the cells were rinsed with PBS thrice and then fixed by 4 vol% formaldehyde solution for 20 min. The fixed cells were permeabilized with 0.1 vol% Triton X-100 (Sigma Aldrich, USA) for 10 min. The actin microfilaments and nuclei of cells were stained by phalloidin (AAT Bioquest, USA) and 4′,6-Diamidino-2-Phenylindole (DAPI; Beyotime, China). Focal adhesion (FA) contact was stained by vinculin using an anti-vinculin antibody (Abcam, USA) and Cy3-conjugated Affinipure Goat Anti-Rabbit IgG (H+L) (Protein Tech Group, USA). Integrin α5 were stained by anti-integrin α5 antibody (Abcam, USA) and Cy3-conjugated Affinipure Goat Anti-Rabbit IgG (H+L) (Protein Tech Group, USA). The cytoskeleton arrangement, FA contact, and integrin α5 distribution of cells were analyzed by a confocal laser scanning microscope (CLSM; TCS SP5, Leica Microsystems, Germany).
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2

Comprehensive Immunoblotting Antibody Protocol

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Primary antibodies: Anti-Atg5 (Cat# AP1812b) was purchased from Abgent, San Diego, USA. Anti-Atg6 (Cat# PD017) was from MBL, Nagoya, Japan. Anti-Atg16L1 (Cat# 8089) was purchased from Cell Signaling Technology, Pickering, Canada. Anti-GAPDH (glyceraldehyde-3-phosphate dehydrogenase, Cat# CW0100) was from CWBIO, Beijing, China. Anti-Actin (Cat# 14395-1-AP) was from Proteintech Group, Chicago, USA. Anti-Flag antibody (Cat# F3165) and monoclonal anti-LC3 (Cat# SAB4200361) were from Sigma-Aldrich, St Louis, USA. Anti-Myc (Cat# 11667149001) and anti-GFP (Cat# 11814460001) were from Roche Applied Science, Indianapolis, USA. Anti-Ppp1r36 was prepared by Beijing Huada Protein Innovation, Beijing, China.
Secondary antibodies: Goat anti-mouse IgG (H + L), horseradish peroxidase conjugated antibody (Cat# 31430) and goat anti-rabbit IgG (H + L), horseradish peroxidase conjugated antibody (Cat# 31460) were from Pierce Company, Rockford, USA. FITC-conjugated immunopure goat anti-rabbit IgG (H + L) (Cat# ZF-0311) was purchased from Feiyi Technology, Wuhan, China. Cy3-conjugated affinipure goat anti-rabbit IgG (H + L) (Cat# SA00009-2) was from Proteintech Group, Chicago, USA.
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3

Forskolin and Melatonin Modulate Chondrocyte Signaling

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Forskolin and melatonin were purchased from Sigma-Aldrich. Y-27632 and arachidonic acid (AA) were purchased from Selleck Chemicals. The following antibodies were used in this study: BMAL1 (Abcam ab3350 for immunofluorescence and Santa Cruz Biotechnology sc-365645 for western blot), aggrecan (Millipore Sigma AB1031), MMP13 (Abcam ab39012 for western blot and Proteintech 18165-1-AP for immunofluorescence), and phosphomyosin light chain 2 (Ser19; Cell Signaling Technology 3671). Horseradish peroxidase (HRP)-conjugated β-actin mouse monoclonal antibody, HRP-conjugated AffiniPure goat anti-mouse or goat anti-rabbit IgG (H + L), fluorescein (FITC)-conjugated AffiniPure goat anti-rabbit IgG (H + L), and Cy3-conjugated AffiniPure goat anti-rabbit IgG (H + L) were purchased from Proteintech. Cell culture reagents were purchased from Gibco.
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4

Immunofluorescence Staining of Tissue Sections

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For immunofluorescence staining, tissue sections were fixed with 4% paraformaldehyde for 20 min, incubated with permeabilization solution (0.1% Triton × 100 and 0.1% sodium citrate) on ice for 2 min and blocked with horse serum for 2 h. Sections were stained with antibodies against Mac3 (1:200, Cat# ab199947, Abcam), CD31 (1:200, Cat# sc-376764, Santa Cruz Biotechnology), α-SMA (1:200, Cat#sc-53142, Santa Cruz Biotechnology), or AIBP (1:200, Cat# ab75114, Abcam) followed by detection with fluorochrome-conjugated secondary antibodies (fluorescein (FITC)–conjugated Affinipure goat anti-rabbit IgG (H + L), Cat# SA00003-2, Proteintech; fluorescein (FITC)–conjugated Affinipure goat anti-mouse IgG (H + L), Cat# SA00003-1, Proteintech; Cy3–conjugated Affinipure goat anti-rabbit IgG (H + L), Cat# SA00009-2, Proteintech; and Cy3–conjugated Affinipure goat anti-mouse IgG (H + L), Cat# SA00009-1, Proteintech). Sections were counterstained with DAPI (Cat# BS097, Biosharp), coverslipped and then scanned with a fluorescence microscope (IX70; Olympus, Tokyo). Negative controls were obtained by incubating tissue sections with the corresponding secondary antibodies alone. Images were analyzed using ImageJ 2X software (Media Cybernetics, Bethesda, MD).
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5

Quantitative Imaging of RVFV Infection

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Vero cells were seeded on cover-slips and treated with 20 μM U18666A for 24 h or with 1 mM MβCD for 4 h. Cells were subsequently infected with RVFV MP-12 at MOI 5 for 16 h and fixed with 4% formalin at room temperature. Cells were blocked with 0.2% Triton X-100 and 2% BSA in PBS at room temperature. Following blocking, cells were incubated with an anti-L antibody (1:500; SinoBiological) for 1 h at room temperature. Cells were washed three times with PBS and incubated with Cy3-conjugated affinipure goat anti-rabbit IgG(H + L) (1:500; Proteintech) for 1 h at room temperature. Cells were washed three times with PBS prior to mounting the coverslips on microscope slides using mounting media containing DAPI (Biotium) for staining of cell nuclei. Images were collected with a DeltaVision wide-field fluorescence microscope (Applied Precision) equipped with a CoolSNAP HQ digital camera (Photometrics) and a 40× objective lens. Excitation light of the required wavelength was generated with an Insight SSI solid-state illumination module (Applied Precision). All acquired images were analyzed using Imaris v. 8.4.1 (Bitplane).
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6

Quantification of Lymphatic Markers in Endothelial Cells

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LECs (5×104) were seeded on coverslips in 24-well plates and cultured with endothelial cell medium at 37°C to allow adherence. Then LECs were cultured in the presence of various culture media containing different IL-8 concentrations for 24 h. After fixation in 4% paraformaldehyde for 15 min, sequential treatments with 0.5% Triton X-100 for 10 min and 4% bovine serum albumin (BSA) for 1 h at room temperature, LECs were incubated with lymphatic vessel endothelial hyaluronic acid receptor-1 (LYVE-1) rabbit polyclonal antibody (1:50), VEGF-C goat polyclonal antibody (1:80) (both from Santa Cruz Biotechnology, Santa Cruz, CA, USA), VEGF-D rabbit monoclonal antibody (1:100; Epitomics, Burlingame, CA, USA), VEGFR-3 rabbit polyclonal antibody (1:100; Abcam, Cambridge, UK), respectively, at 4°C overnight. Afterwards, Cy3-conjugated Affinipure goat anti-rabbit IgG (H+L) (1:1,000 dilution) and Cy3-conjugated Affinipure donkey anti-goat IgG (H+L) (1:1,000 dilution) (both from Proteintech Group, Wuhan, China) were added to the corresponding samples for an additional 1 h. After counterstaining with DAPI, coverslips were observed under a laser confocal scanning microscope (LSM710; Zeiss, Oberkochen, Germany).
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7

Immunohistochemical Analysis of NRF2 and α-SMA in Kidney Tissues

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The kidney specimens were fixed in 4% paraformaldehyde overnight and embedded in paraffin. Tissue microarray sections were blocked with 5% bovine serum albumin for 1 h and then incubated with the indicated primary antibodies against NRF2 (ABclonal, Wuhan, China, Cat# A0674, 1:200 dilution) and α-SMA (Proteintech, Wuhan, China, Cat# 14395-1-AP, 1:1000 dilution) overnight. After incubation, kidney sections were incubated with Cy3-conjugated Affinipure goat anti-rabbit IgG (H + L) (Proteintech, Wuhan, China, Cat# SA00009-2, 1:1000 dilution) secondary antibodies followed by staining with the 3,3′diaminobenzidine substrate. DAB (ZSGB-BIO, Beijing, China, Cat# ZLI-9017) was used for antibody reactions. The non-immune goat IgG was used as the negative control. The slides were counterstained with hematoxylin, then dehydrated and mounted. Immunohistochemistry sections were imaged using a Nikon microscope.
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8

Quantifying FBXW7 Expression

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A total of 5 × 104 cells were plated in each well of a 24-well plate (Corning). After 24 h, the cells were fixed, permeabilized, blocked and incubated with primary antibodies against FBXW7 (Proteintech). The bound primary antibody was detected using Cy3–conjugated AffiniPure goat anti-rabbit IgG (H + L) (Proteintech). Fluorescence was detected using confocal microscopy (Leica).
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9

Immunofluorescence Staining of Cellular Markers

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EPCs (5 × 104 cells) were seeded on sterilized coverslips. After treatment, cells were washed three times with PBS (137 mM NaCl, 2.7 mM KCl, 10 mM Na2HPO4, 1.8 mM KH2PO4) and fixed by 4% paraformaldehyde (PFA, C104188, ALADDIN, Shanghai, China) for 30 min. The cell membrane was perforated by 0.3% Triton X-100 (Biosharp, BS084, Hefei, China) for 15 min, and the cell was blocked with 5% bovine serum albumin (BSA, Solarbio, A8010, Beijing, China) for 1.5 h. The primary antibodies rabbit anti-NLRP3 (1:200, Abways Technology, Inc., CY5651, Shanghai, China), rabbit anti-PYCARD (ASC, 1:100, Abways Technology, Inc., AY0406, Shanghai, China), rabbit anti-CD31 (1:100, affinity, P16284, Changzhou, China), rabbit anti-α-tubulin (1:1000, Abways, AB0048, Shanghai, China), rabbit anti-γ-H2AX (1:100, Proteintech, 10856-1-AP, Wuhan, China) were incubated for 5 h, respectively. After triple washed by PBS, NLRP3, and CD31 were labeled by the second fluorescent antibody Cy3–conjugated Affinipure Goat Anti-Rabbit IgG(H + L) (1:100, Proteintech, SA00009-2, Wuhan, China), and ASC, α-tubulin, γ-H2AX were labeled by the second fluorescent antibody Goat Anti-Rabbit IgG (H + L) Alexa Fluor 488 (1:100, Abways Technology, Inc., AB0141, Shanghai, China) for 2 h, respectively.
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10

Lung p21 and mitophagy analysis

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The expression of p21 in lungs, especially in the bronchus, was detected by immunofluorescence. After dewaxing and dehydration treatment, the lung tissue slices were added with a 5% BSA for 30 min, and then anti-p21 antibody was incubated (1:1000 dilution; Cell Signaling Technology (CST), MA, USA) overnight at 4 °C. On the following day, slices were incubated with Cy3–conjugated Affinipure goat Anti-Rabbit IgG (H + L) (Proteintech, Wuhan, China) for 50 min. At least six images were randomly taken for each section and the red staining area was calculated by CaseViewer software.
Moreover, BEAS-2B cells cultured in 24-well culture slides were fixed with 4% paraformaldehyde for 15 min and blocked with sheep serum protein mixed with 0.3% TritonX-100 for 2 h at room temperature (26 °C). The primary antibody LC3B (GTX17380, Gene Tex), TOM20 (11802–1-AP, Proteintech) and the secondary antibody were incubated according to the manufacturer’s instruction. Finally, confocal laser scanning microscopy was used to image and assess the mitophagy.
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