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19 protocols using betaplate scint

1

Quantifying ARPE-19 Cell Proliferation

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ARPE-19 cells (5×103) were seeded in 96-well flat plate with the presence of absence of rIL-22 (10 ng/ml). Result was the representative of three independent experiments and each experiment was performed in triplicate. After 30 hr, 1 μCi of [3H]-Thymidine (American Radiolabeled Chemicals, Inc., St. Louis, MO, USA) was added to each well. After 18 hr incubation, cells were harvested onto glass fiber filters using a cell harvester (Inotech biosystems international, Dietikon, Switzerland). When dry, these were sealed into polyethylene bags with scintillation fluid (BetaplateScint; PerkinElmer, Boston, MA, USA) and incorporated [3H]-thymidine counted on a MicroBeta Trilux 1450 (PerkinElmer).
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2

Gibberellin Separation by RP-HPLC

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The separation of gibberellin by gradient RP-HPLC was adapted from the isocratic system described by Bhalla and Singh48 (link), where the solvent was initially 90% acetonitrile (ACN) and 10% H2O at a flow of 0.5 mL/min for 45 min at 30 °C over a YMC C18 ODS-A column (5 µm, 300 Å, 3.0 mm × 150 mm). The wavelength used for analysis was 206 nm, and commercial gibberellin 3 (GA3) and 4 (GA4) (Sigma-Aldrich, Darmstadt, Germany) was used as a standard.
PfexG was co-injected with standard GA4, and the components were chromatographically separated by RP-HPLC. The samples were dried at 50 °C, resuspended in 0.5 mL of scintillation liquid (BetaplateScint, Perkin Elmer, Groningen, Netherlands) and analyzed in a Beckman® scintillator unit.
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3

Radiolabeled Glutamine Uptake Assay

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L-glutamine uptake was determined by measuring the incorporation of radio-labeled L-glutamine into biotinylated-SLC1A5 proteoliposomes. Specifically, the assay was initiated by the addition of biotinylated-SLC1A5 proteoliposomes into triplicate wells of a 96-well polypropylene plate with each well containing the indicated concentration of NaCl and 50 µM L-glutamine/L-[3,4-3H)]-glutamine (100 dpm/pmol). After the indicated time at room temperature (~22°C), the assay was stopped by the addition of 15 µl of ice-cold streptavidin beads (Pierce Streptavidin Agarose) prepared in 20 mM Tris, pH 7.0, 15 mM sucrose buffer. After 10 min at room temperature the biotin proteoliposome/streptavidin bead complex was transferred to a 96-well GF/C filter plate (PerkinElmer) plate (pre-blocked with 0.1% BSA and washed x 2 in 20 mM Tris, pH 7.0, 15 mM sucrose buffer). The plate was then vacuum filtered and then washed three times with 500 µl per well of ice-cold 20 mM Tris, pH 7.0, 15 mM sucrose buffer. The plate was then air dried overnight and 50 ul of Betaplate Scint (PerkinElmer) was added to each well of the 96-well plate. The plate was then sealed and glutamine uptake was determined by scintillation counting with a MicroBeta2 (PerkinElmer).
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4

Binding Affinity of NP-011 to Integrins

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To analyze the binding affinity between NP-011 and integrins, we performed a radioligand binding assay, and an assay was done by Gifford Bioscience (Birmingham, UK). Briefly, the NP-011 was radio-labeled with iodine-125 (125I). Then, 125I-labeled NP-011 in buffer (50 mM Tris, 5 mM MgCl2, 100 mM NaCl, 1% BSA (pH 7.4)) was incubated in a HIS-tagged αvβ3 (ACRO Biosystems IT3-H52E3) or αvβ5 (ACRO Biosystems IT5-H52W5) protein-coated plate with a concentration range of 0–100 μg/mL. The incubation was stopped by washing the wells with wash buffer (50 mM Tris, 5 mM MgCl2, pH 7.4, ice cold). Following washing, NaOH (0.1 M) was added to each well and the plates were incubated at 40 °C for 1 h to digest the protein. Following digestion, the samples were transferred to a counting plate and neutralized, then scintillation cocktail (Betaplate Scint; PerkinElmer, Waltham, MA, USA) was added and the radioactivity counted in a Wallac® TriLux 1450 MicroBeta counter. All experiments were validated step by step by Gifford Bioscience. Data analysis was performed using the nonlinear curve fitting routines in Prism® (GraphPad Software Inc, GraphPad Prism 5.0, San Diego, CA, USA) to obtain Kd values.
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5

Quantifying Glucose Uptake in Transfected Cells

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Glucose uptake was measured according to Yun and colleagues18 (link), with modifications. Transfected HEK293T cells were washed once with KRB warmed to 37 °C, then incubated with 1 μCi/ml [3H]-2-deoxyglucose (PerkinElmer, NET328A001MC), prepared in KRB, at 37 °C for 10 min. To terminate the assay, cells were washed 3 times with ice-cold KRB and lysed in 0.1% (w/v) SDS at 37 °C for 30 min. Cell lysates were diluted 1:4 in β-scintillation fluid (Beta-Plate Scint, PerkinElmer). Incorporation of [3H]-2-deoxyglucose was quantified with a Wallac 1450 Microbeta Liquid Scintillation Counter (PerkinElmer), expressing results in counts per minute (CPM). Total protein contents were determined by the Bicinchoninic Acid procedure19 (link) to define results as CPM/mg.
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6

Triolein Absorption Kinetics in Mice

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After overnight fasting, mice received 200 μL canola oil containing 15 μCi 3H-triolein by gavage and sacrificed 30 min later. Blood was removed by perfusing the heart for 3 min with PBS. The intestinal lumina was flushed four times with 5 mM taurocholate, the small intestine divided into three equal segments (proximal, medial, and distal), and the segments were dissolved in SolvableTM (Perkin Elmer, Courtaboeuf, Villejust, France) overnight at 60 °C and incubated in scintillation fluid (Betaplate Scint, Perkin Elmer, Waltham, MA, USA). The radioactivity in each intestinal segment was measured by a liquid scintillation analyzer.
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7

Proliferation of Citrullinated Peptide Clones

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To assess proliferation in response to citrullinated, partially citrullinated, or unmodified peptide, clones or cells were plated at 2.5×104 cells/well in 96-well round bottom plates in human T cell media with 105 irradiated antigen presenting cells from a HLA-DRB1*04:01 positive donor plus peptide and incubated at 37°C. After 72 hours, 1 μCi of [3H]-thymidine was added and incubated for 24 hours. Cells were then washed, water lysed, and DNA was collected onto glass fiber filter membranes (PerkinElmer) using a plate harvester. Each filter mat was immersed in Betaplate Scint (PerkinElmer) and counts collected on a Wallac 1450 LSC and Luminescence Counter (PerkinElmer). Stimulation index was determined by calculating the ratio of counts of peptide-stimulated cells to counts of non-stimulated cells.
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8

NAMPT Enzymatic Activity Assay

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Enzymatic activity of NAMPT was assayed as described by Fulco et al (11). Muscle proteins (200μg) were suspended in 100μl 0.01mol/l NaHPO4 buffer, pH 7.4. The supernatant was removed by centrifugation at 23,000g for 90min at 0°C. Ten μL of supernatant were added to 50μl reaction mix (5mM Tris–HCl pH 7.4; 2mM ATP; 5mM MgCl2; 0.5mM PRPP; 6.2μM 14C-nicotinamide; American Radiolabelled Chemicals, St. Louis, MO) and incubated at 37°C for 1h. The reaction was terminated by transfer into tubes containing 2ml of acetone. The whole mixture was then pipetted onto acetone-pre-soaked glass microfiber filters (GF/A Ø 24mm; Whatman, Maidstone, UK). After rinsing twice with 1ml acetone, filters were dried, transferred into vials with 6ml scintillation cocktail (Betaplate Scint, PerkinElmer, Waltham, MA) and radioactivity of 14C-NMN was quantified in a liquid scintillation counter (Wallac 1409 DSA, PerkinElmer).
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9

Proliferation Assay for MDA-MB231 Cells

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MDA-MB231 cells growing at logarithmic growth phase were trypsinized and resuspended in growth media at 2.5×104 cells/ml. A hundred microliter of the cell suspension was dispensed onto a 96-well plate. Quadruplicate samples were incubated in the presence or absence of agonistic anti-CD40 antibody (2, 4, 8, and 16 μg/ml) for 24 hrs. After addition of 1 μCi/mL of [3H]-thymidine to each well, 96-well plate was further incubated for 18 hrs at 37°C in a 5% CO2 atmosphere. Then, cells were harvested onto glass fiber filters using a cell harvester (Inotech Biosystems International, Dietikon, Switzerland). Glass fiber filters were dried and sealed into polythene bags with scintillation fluid (Betaplate Scint; PerkinElmer, Boston, MA, USA). The incorporation of [3H]-thymidine counted on a MicroBeta Trilux1450 (PerkinElmer, Boston, MA, USA).
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10

LRRK2-IN-1 Radioligand Binding Assay

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One hundred fifty microliters of tissue samples (90–110 µg protein/well), 50 µL of LRRK2-IN-1 (various concentrations), and 50 µl of radioligand ([3H]LRRK2-IN-1) were added to each well of a 96-well microtiter plate. The plate was incubated at 30 °C with continuous rotation for 1 h. The incubation was stopped by vacuum filtration onto 0.3 % PEI pre-soaked GF/C filters using a 96-well FilterMate™ harvester, followed by four washes with ice-cold wash buffer. Filters were then dried for 30 min under warm air flow. The filter was sealed in polyethylene, scintillation cocktail (Betaplate Scint; PerkinElmer) added, and the radioactivity counted in a LSC (Wallac).
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